Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JY392_RS17940 Genome accession   NZ_CP071073
Coordinates   3700671..3701408 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 3347558     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3695671..3706408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY392_RS17925 (JY392_17920) clpC 3696125..3698698 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  JY392_RS17930 (JY392_17925) yfiH 3698828..3699559 (-) 732 WP_000040163.1 purine nucleoside phosphorylase YfiH -
  JY392_RS17935 (JY392_17930) rluD 3699556..3700536 (-) 981 WP_000079106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JY392_RS17940 (JY392_17935) comL 3700671..3701408 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JY392_RS17945 (JY392_17940) raiA 3701679..3702020 (+) 342 WP_000178463.1 ribosome-associated translation inhibitor RaiA -
  JY392_RS17950 (JY392_17945) pheL 3702124..3702171 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JY392_RS17955 (JY392_17950) pheA 3702270..3703430 (+) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  JY392_RS17960 (JY392_17955) tyrA 3703473..3704594 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JY392_RS17965 (JY392_17960) aroF 3704605..3705675 (-) 1071 WP_001168043.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JY392_RS17970 (JY392_17965) yfiL 3705884..3706249 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=476025 JY392_RS17940 WP_000197686.1 3700671..3701408(+) (comL) [Escherichia coli strain 3347558]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=476025 JY392_RS17940 WP_000197686.1 3700671..3701408(+) (comL) [Escherichia coli strain 3347558]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAACCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376