Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   H8P15_RS16610 Genome accession   NZ_CP060420
Coordinates   3390905..3391594 (-) Length   229 a.a.
NCBI ID   WP_196770545.1    Uniprot ID   -
Organism   Bacillus velezensis strain J17-4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3385905..3396594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8P15_RS16575 (H8P15_16575) fliW 3385996..3386427 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  H8P15_RS16580 (H8P15_16580) - 3386457..3387026 (-) 570 WP_007407476.1 DUF6470 family protein -
  H8P15_RS16585 (H8P15_16585) flgL 3387117..3388034 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  H8P15_RS16590 (H8P15_16590) flgK 3388046..3389563 (-) 1518 WP_032876170.1 flagellar hook-associated protein FlgK -
  H8P15_RS16595 (H8P15_16595) - 3389579..3390061 (-) 483 WP_032876168.1 flagellar protein FlgN -
  H8P15_RS16600 (H8P15_16600) flgM 3390076..3390342 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  H8P15_RS16605 (H8P15_16605) - 3390412..3390831 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  H8P15_RS16610 (H8P15_16610) comFC 3390905..3391594 (-) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  H8P15_RS16615 (H8P15_16615) - 3391600..3391884 (-) 285 WP_003151389.1 competence protein ComFB -
  H8P15_RS16620 (H8P15_16620) comFA 3391942..3393327 (-) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  H8P15_RS16625 (H8P15_16625) - 3393436..3394284 (-) 849 WP_032876160.1 DegV family protein -
  H8P15_RS16630 (H8P15_16630) degU 3394382..3395071 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  H8P15_RS16635 (H8P15_16635) degS 3395148..3396311 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25274.96 Da        Isoelectric Point: 8.4871

>NTDB_id=475995 H8P15_RS16610 WP_196770545.1 3390905..3391594(-) (comFC) [Bacillus velezensis strain J17-4]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=475995 H8P15_RS16610 WP_196770545.1 3390905..3391594(-) (comFC) [Bacillus velezensis strain J17-4]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCCGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594