Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   CVCAS_RS11105 Genome accession   NC_017486
Coordinates   2213300..2213791 (-) Length   163 a.a.
NCBI ID   WP_014570828.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis CV56     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2208300..2218791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVCAS_RS11105 (CVCAS_2179) comX 2213300..2213791 (-) 492 WP_014570828.1 hypothetical protein Regulator
  CVCAS_RS11110 (CVCAS_2180) ezrA 2214047..2215777 (-) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  CVCAS_RS11115 (CVCAS_2181) tsf 2215982..2217010 (-) 1029 WP_003132668.1 translation elongation factor Ts -
  CVCAS_RS11120 (CVCAS_2182) rpsB 2217131..2217898 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19733.63 Da        Isoelectric Point: 5.6148

>NTDB_id=47593 CVCAS_RS11105 WP_014570828.1 2213300..2213791(-) (comX) [Lactococcus lactis subsp. lactis CV56]
MTYYLEEEGFEILFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMERYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=47593 CVCAS_RS11105 WP_014570828.1 2213300..2213791(-) (comX) [Lactococcus lactis subsp. lactis CV56]
ATGACATATTACTTGGAAGAAGAGGGTTTTGAAATTCTGTTTTCAGAAATGAAACCTATAGTCATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGGCGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGGAACGGTATCGCCTTCGTGAAAAAATAAAGGCTATTTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

97.546

100

0.975
  comX Lactococcus lactis subsp. cremoris KW2

76.687

100

0.767

Multiple sequence alignment