Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   H8S71_RS12070 Genome accession   NZ_CP060417
Coordinates   2376165..2376500 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2371165..2381500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS12050 (H8S71_12045) gcvT 2371758..2372846 (-) 1089 WP_187001803.1 glycine cleavage system aminomethyltransferase GcvT -
  H8S71_RS12055 (H8S71_12050) hepAA 2373287..2374960 (+) 1674 WP_128993149.1 SNF2-related protein -
  H8S71_RS12060 (H8S71_12055) yqhG 2374981..2375775 (+) 795 WP_003230200.1 YqhG family protein -
  H8S71_RS12065 (H8S71_12060) sinI 2375958..2376131 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  H8S71_RS12070 (H8S71_12065) sinR 2376165..2376500 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  H8S71_RS12075 (H8S71_12070) tasA 2376593..2377378 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  H8S71_RS12080 (H8S71_12075) sipW 2377442..2378014 (-) 573 WP_128993656.1 signal peptidase I SipW -
  H8S71_RS12085 (H8S71_12080) tapA 2377998..2378759 (-) 762 WP_128993152.1 amyloid fiber anchoring/assembly protein TapA -
  H8S71_RS12090 (H8S71_12085) yqzG 2379031..2379357 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  H8S71_RS12095 (H8S71_12090) spoIITA 2379399..2379578 (-) 180 WP_014480252.1 YqzE family protein -
  H8S71_RS12100 (H8S71_12095) comGG 2379650..2380024 (-) 375 WP_128993153.1 ComG operon protein ComGG Machinery gene
  H8S71_RS12105 (H8S71_12100) comGF 2380025..2380408 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  H8S71_RS12110 (H8S71_12105) comGE 2380434..2380781 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  H8S71_RS12115 (H8S71_12110) comGD 2380765..2381196 (-) 432 WP_015714255.1 comG operon protein ComGD Machinery gene
  H8S71_RS12120 (H8S71_12115) comGC 2381186..2381482 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=475892 H8S71_RS12070 WP_003226345.1 2376165..2376500(+) (sinR) [Bacillus subtilis subsp. subtilis strain ONU 559]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=475892 H8S71_RS12070 WP_003226345.1 2376165..2376500(+) (sinR) [Bacillus subtilis subsp. subtilis strain ONU 559]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1