Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H7A79_RS12970 Genome accession   NZ_CP060414
Coordinates   2512838..2513134 (+) Length   98 a.a.
NCBI ID   WP_135034493.1    Uniprot ID   -
Organism   Neisseria musculi strain NW831     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2513405..2513797 2512838..2513134 flank 271


Gene organization within MGE regions


Location: 2512838..2513797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7A79_RS12970 (H7A79_2411) comE 2512838..2513134 (+) 297 WP_135034493.1 helix-hairpin-helix domain-containing protein Machinery gene
  H7A79_RS12975 (H7A79_2412) - 2513393..2513779 (+) 387 Protein_2529 transposase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10157.91 Da        Isoelectric Point: 10.2803

>NTDB_id=475849 H7A79_RS12970 WP_135034493.1 2512838..2513134(+) (comE) [Neisseria musculi strain NW831]
MKLYLLGILSAITPTLLLAAVNINTATAEELKALPGIGPSKAAAIVEYRSQNGSFKSVDDLKNVKGIGEGILSKLREEAT
VEGKAAGKAQPAVKKPAK

Nucleotide


Download         Length: 297 bp        

>NTDB_id=475849 H7A79_RS12970 WP_135034493.1 2512838..2513134(+) (comE) [Neisseria musculi strain NW831]
CTGAAACTTTATTTATTGGGTATCTTGAGCGCGATAACCCCGACGCTGTTGCTGGCGGCGGTAAACATCAACACGGCAAC
GGCGGAGGAGCTGAAGGCGCTGCCGGGGATAGGGCCCTCGAAGGCTGCCGCGATAGTGGAGTACCGCAGTCAGAACGGCA
GCTTTAAAAGCGTGGACGATTTGAAGAATGTGAAAGGGATAGGCGAAGGGATTCTGTCCAAGTTGAGGGAGGAAGCAACG
GTAGAGGGCAAAGCAGCGGGGAAAGCGCAGCCGGCAGTGAAGAAACCGGCCAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

53.608

98.98

0.531
  comE Neisseria gonorrhoeae MS11

53.608

98.98

0.531
  comE Neisseria gonorrhoeae MS11

53.608

98.98

0.531
  comE Neisseria gonorrhoeae MS11

53.608

98.98

0.531
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.564

79.592

0.418