Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H7A79_RS10320 Genome accession   NZ_CP060414
Coordinates   1967541..1968686 (+) Length   381 a.a.
NCBI ID   WP_187000182.1    Uniprot ID   -
Organism   Neisseria musculi strain NW831     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1962541..1973686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7A79_RS10295 (H7A79_1900) - 1962613..1963206 (-) 594 WP_187000179.1 DUF4390 domain-containing protein -
  H7A79_RS10300 (H7A79_1901) rsmB 1963172..1964431 (-) 1260 WP_135034598.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  H7A79_RS10305 (H7A79_1902) fmt 1964428..1965351 (-) 924 WP_187000180.1 methionyl-tRNA formyltransferase -
  H7A79_RS10310 (H7A79_1903) def 1965377..1965880 (-) 504 WP_135034596.1 peptide deformylase -
  H7A79_RS10315 (H7A79_1904) - 1966038..1967318 (+) 1281 WP_187000181.1 LysM domain-containing protein -
  H7A79_RS10320 (H7A79_1906) dprA 1967541..1968686 (+) 1146 WP_187000182.1 DNA-processing protein DprA Machinery gene
  H7A79_RS10325 (H7A79_1907) - 1968706..1969161 (+) 456 WP_187000183.1 DUF494 family protein -
  H7A79_RS10330 - 1969304..1969618 (+) 315 WP_187000184.1 hypothetical protein -
  H7A79_RS10335 (H7A79_1908) - 1969638..1969910 (+) 273 WP_187000185.1 hypothetical protein -
  H7A79_RS10340 (H7A79_1909) topA 1970088..1972397 (+) 2310 WP_187000186.1 type I DNA topoisomerase -
  H7A79_RS10345 (H7A79_1910) rsmD 1972573..1973151 (+) 579 WP_187001690.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 40690.57 Da        Isoelectric Point: 6.6150

>NTDB_id=475842 H7A79_RS10320 WP_187000182.1 1967541..1968686(+) (dprA) [Neisseria musculi strain NW831]
MNDSERLAWIQLALTPYVGAESFLALIRHYGSARAALAAPAESVQKLVRHKQAVAAWDGDNAPATAAAEAALAWETQEHC
RLMLLGDSDFPMMLTEGMTPPPLLFLRGRTELLHRPTVAVVGSRHATPQAARVARDFSHALSEKGVTVISGMACGIDTAA
HQGALQARGGTIAVWGTGIDRIYPQTNKALAYQIAEQGLVISEFPLGTRPLAGNFPRRNRLIAALAQAVLVVEAATESGS
LITAKLAAEMGREVMAVPGSIDNPHSKGCHKLIKEGAKLVECLNDIMQECPQLLQHTPPEHPAPQAVRNTAQHEENAVAA
APAEQPAEHPLLTALGYSPAHPDSLAQALNLPTAEIYAQLLELELENRVAALPGGRYQRVK

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=475842 H7A79_RS10320 WP_187000182.1 1967541..1968686(+) (dprA) [Neisseria musculi strain NW831]
ATGAATGATTCAGAACGGCTCGCCTGGATACAGCTTGCCCTCACTCCTTATGTAGGCGCAGAAAGCTTTTTGGCATTGAT
CCGGCATTACGGCTCGGCCCGTGCCGCCTTAGCGGCACCGGCCGAATCCGTTCAGAAACTGGTTCGCCACAAACAGGCAG
TTGCAGCATGGGACGGGGATAACGCACCAGCAACCGCCGCCGCAGAAGCCGCACTGGCATGGGAAACACAGGAACATTGC
CGGCTGATGCTGCTGGGCGACAGCGACTTTCCCATGATGCTCACGGAAGGCATGACTCCACCGCCGCTGCTATTTTTACG
CGGTCGCACCGAATTGCTGCACCGCCCCACTGTTGCCGTTGTCGGCAGCCGCCATGCCACACCGCAGGCAGCAAGGGTTG
CCCGCGATTTCAGCCATGCACTGAGCGAAAAAGGAGTAACCGTCATTTCGGGGATGGCTTGCGGTATCGACACCGCAGCG
CACCAAGGCGCATTGCAGGCCAGAGGCGGCACCATTGCCGTTTGGGGAACGGGAATAGACCGCATTTATCCGCAAACGAA
TAAAGCACTGGCCTACCAGATTGCCGAGCAAGGTTTGGTAATCAGCGAGTTTCCGTTGGGAACCCGCCCTCTGGCCGGCA
ACTTTCCGCGCCGCAACCGCCTGATTGCCGCTTTGGCACAAGCCGTTTTGGTGGTAGAGGCCGCCACCGAATCCGGGTCG
CTGATTACCGCCAAACTGGCCGCAGAAATGGGGCGCGAAGTGATGGCTGTACCGGGCTCCATCGACAACCCGCACAGCAA
AGGCTGCCACAAACTGATAAAAGAAGGTGCCAAACTGGTGGAATGCCTGAACGATATCATGCAGGAATGCCCGCAGTTAT
TGCAGCACACCCCGCCCGAACACCCTGCCCCGCAGGCGGTTCGAAACACCGCGCAACACGAGGAAAACGCCGTAGCGGCC
GCACCTGCCGAACAGCCCGCCGAGCATCCGCTCCTAACGGCTTTAGGCTACAGCCCGGCACACCCCGACAGCCTGGCGCA
GGCTTTAAACCTGCCCACCGCCGAAATCTACGCACAATTGCTTGAGCTCGAGCTGGAAAACCGGGTTGCCGCCTTGCCAG
GCGGCCGCTACCAGCGGGTTAAATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-375)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis MC58

63.98

100

0.667
  dprA Neisseria gonorrhoeae MS11

63.98

100

0.667
  dprA Neisseria meningitidis strain C311

63.98

100

0.667
  dprA Neisseria gonorrhoeae strain FA1090

63.198

100

0.654
  dprA Vibrio cholerae strain A1552

38.684

99.738

0.386
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.795

100

0.378
  dprA Acinetobacter baylyi ADP1

38.843

95.276

0.37
  dprA Vibrio campbellii strain DS40M4

36.316

99.738

0.362