Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   H7A79_RS09235 Genome accession   NZ_CP060414
Coordinates   1766357..1766887 (-) Length   176 a.a.
NCBI ID   WP_187000052.1    Uniprot ID   -
Organism   Neisseria musculi strain NW831     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1761357..1771887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7A79_RS09220 (H7A79_1705) aroB 1762053..1763132 (-) 1080 WP_187000049.1 3-dehydroquinate synthase -
  H7A79_RS09225 (H7A79_1706) - 1763300..1763860 (-) 561 WP_187000050.1 shikimate kinase -
  H7A79_RS09230 (H7A79_1707) pilQ 1764189..1766342 (-) 2154 WP_187000051.1 type IV pilus secretin PilQ Machinery gene
  H7A79_RS09235 (H7A79_1708) pilP 1766357..1766887 (-) 531 WP_187000052.1 pilus assembly protein PilP Machinery gene
  H7A79_RS09240 (H7A79_1709) pilO 1766905..1767546 (-) 642 WP_187000053.1 type 4a pilus biogenesis protein PilO -
  H7A79_RS09245 (H7A79_1710) - 1767550..1768158 (-) 609 WP_187000054.1 PilN domain-containing protein -
  H7A79_RS09250 (H7A79_1711) pilM 1768160..1769257 (-) 1098 WP_135034360.1 type IV pilus assembly protein PilM -
  H7A79_RS09255 (H7A79_1712) - 1769408..1771630 (+) 2223 Protein_1811 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19260.53 Da        Isoelectric Point: 8.0402

>NTDB_id=475838 H7A79_RS09235 WP_187000052.1 1766357..1766887(-) (pilP) [Neisseria musculi strain NW831]
MKNKILLAGILALSACTPAHEDLNQWMNETRQQSKLKVIPFEAPSVSQAKTYTPPNHSGLNAFDSKRLNAAQQGANAPNA
SRPKEVLENFSLETLKYVGTLSKGNRVTGYVEADGHVYTVQPGNYIGQNHGRIQSITADLITITELVEDTYGNWTYRKAE
LPLSSSADNNAAQTNK

Nucleotide


Download         Length: 531 bp        

>NTDB_id=475838 H7A79_RS09235 WP_187000052.1 1766357..1766887(-) (pilP) [Neisseria musculi strain NW831]
ATGAAAAACAAAATACTGCTCGCAGGCATATTGGCGTTATCCGCCTGCACCCCGGCTCACGAAGATTTGAACCAATGGAT
GAACGAAACCCGCCAGCAATCCAAATTGAAAGTGATTCCCTTTGAAGCGCCTTCAGTCAGCCAGGCCAAAACCTATACAC
CGCCTAACCACAGCGGCCTGAATGCTTTCGACAGCAAGCGTTTGAATGCCGCGCAACAAGGGGCTAACGCACCGAATGCC
AGCCGTCCGAAAGAAGTGTTGGAAAACTTTAGCTTGGAAACGCTGAAATATGTAGGCACTTTAAGCAAAGGAAACCGGGT
TACCGGTTATGTGGAGGCCGACGGCCATGTTTATACCGTACAACCCGGCAACTACATCGGCCAAAACCACGGTCGGATTC
AAAGCATCACAGCCGACCTGATTACGATTACAGAGCTTGTAGAAGATACCTACGGCAACTGGACTTACCGAAAAGCAGAA
CTACCGTTGAGCAGCAGTGCAGACAATAACGCCGCTCAAACCAACAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

53.757

98.295

0.528