Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   JS609_RS11420 Genome accession   NZ_CP071043
Coordinates   2252917..2254407 (-) Length   496 a.a.
NCBI ID   WP_225722036.1    Uniprot ID   -
Organism   Bacillus subtilis isolate ELA2001105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2247917..2259407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS11390 (JS609_02244) gudB 2248063..2249337 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  JS609_RS11395 (JS609_02245) mecB 2249493..2250077 (-) 585 WP_003230533.1 genetic competence negative regulator -
  JS609_RS11400 (JS609_02246) ypbG 2250236..2251015 (-) 780 WP_003230532.1 metallophosphoesterase -
  JS609_RS11405 (JS609_02247) ypbF 2251103..2251546 (-) 444 WP_003230531.1 YpbF family protein -
  JS609_RS11410 (JS609_02248) claE 2251609..2252337 (-) 729 WP_225722035.1 LysM peptidoglycan-binding domain-containing protein -
  JS609_RS11415 (JS609_02249) ypbD 2252288..2252890 (-) 603 WP_024573135.1 CPBP family intramembrane glutamic endopeptidase -
  JS609_RS11420 (JS609_02250) recS 2252917..2254407 (-) 1491 WP_225722036.1 ATP-dependent DNA helicase RecQ Machinery gene
  JS609_RS11425 (JS609_02251) gmmB 2254400..2255458 (-) 1059 WP_004398594.1 helix-turn-helix domain-containing protein -
  JS609_RS11430 (JS609_02252) fdxA 2255724..2255972 (+) 249 WP_003225461.1 ferredoxin -
  JS609_RS11435 (JS609_02253) fmnP 2256013..2256585 (-) 573 WP_014664441.1 riboflavin transporter FmnP -
  JS609_RS11440 (JS609_02254) serA 2257082..2258659 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56494.98 Da        Isoelectric Point: 6.3464

>NTDB_id=475837 JS609_RS11420 WP_225722036.1 2252917..2254407(-) (recS) [Bacillus subtilis isolate ELA2001105]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEINSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=475837 JS609_RS11420 WP_225722036.1 2252917..2254407(-) (recS) [Bacillus subtilis isolate ELA2001105]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGGCAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAATCTGCAAGGCCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAATAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CCGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTTC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGGAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGATGGCTGTTTAAGGCAGGCACTATTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996