Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   JS608_RS16110 Genome accession   NZ_CP071042
Coordinates   3255944..3257716 (-) Length   590 a.a.
NCBI ID   WP_057080683.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3250944..3262716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS16090 (JS608_03220) sdhA 3251157..3252917 (-) 1761 WP_003152573.1 succinate dehydrogenase flavoprotein subunit -
  JS608_RS16095 (JS608_03221) sdhC 3252951..3253559 (-) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  JS608_RS16100 (JS608_03222) - 3253856..3254302 (+) 447 WP_003152568.1 YslB family protein -
  JS608_RS16105 (JS608_03223) - 3254349..3255578 (-) 1230 WP_014305531.1 aspartate kinase -
  JS608_RS16110 (JS608_03224) uvrC 3255944..3257716 (-) 1773 WP_057080683.1 excinuclease ABC subunit UvrC Machinery gene
  JS608_RS16115 (JS608_03225) trxA 3257859..3258173 (-) 315 WP_003152560.1 thioredoxin -
  JS608_RS16120 (JS608_03226) - 3258326..3259816 (-) 1491 WP_079004993.1 alpha-N-arabinofuranosidase -
  JS608_RS16125 (JS608_03227) - 3260025..3261002 (-) 978 WP_015387882.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  JS608_RS16130 (JS608_03228) - 3261034..3261807 (-) 774 WP_063174690.1 electron transfer flavoprotein subunit beta/FixA family protein -
  JS608_RS16135 (JS608_03229) - 3261821..3262600 (-) 780 WP_024085671.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68313.22 Da        Isoelectric Point: 9.5627

>NTDB_id=475724 JS608_RS16110 WP_057080683.1 3255944..3257716(-) (uvrC) [Bacillus amyloliquefaciens isolate ELA1901024]
MDKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNREIVEDITRFLKGGHNEIKKELEAKMAEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDRDMIGEL
LETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPVFLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSVFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQLLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=475724 JS608_RS16110 WP_057080683.1 3255944..3257716(-) (uvrC) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGGATAAACAACTGAAAGAAAAGCTGGCCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGACCGTCAGAAAAC
AGTCATCTACGTGGGGAAAGCGAAAGTCTTGAAAAACAGGGTGCGGTCTTATTTCACCGGTTCTCACGACGCGAAAACCC
AACGGCTGGTGACGGAGATTGAGGACTTTGAATATATCGTGACTTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGTCATCCTCGGCTGATTGTCACCCGGAATGTCAAAAAAGACAAGGGACGCTATTTCGGCCCGTATCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTTTACCCGCTCAGGAAATGCTCAAAGCTTCCGGACCGCGTCTGTCTT
TATTATCATCTCGGCCAATGCCTCGCCCCATGTGTAAAGGATATATCTGAGGAGACAAACCGCGAGATTGTTGAAGACAT
CACCCGTTTTTTAAAGGGAGGGCATAACGAAATCAAAAAAGAGCTTGAAGCGAAAATGGCAGAAGCGGCCGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGACCAGCTTGCTCACATCGAATCGACGATGGAGAAGCAGAAAATGACCATGAAT
GACCTTCTGGACCGCGATGTGTTTGCATATGCCTACGATAAAGGCTGGATGTGCGTTCAAGTCTTTTTTATACGCCAAGG
AAAACTGATCGAACGCGATGTCAGCATGTTTCCGATGTATCAGGAAGCGGATGAAGAGTTTCTGACCTTCATCGGCCAGT
TCTATTCCAAAAACAATCACTTTCTGCCTAAGGAAATTCTGGTGCCTGACAGCGTTGACAGGGACATGATTGGCGAGCTG
TTGGAAACCGCCGTGCATCAGCCGAAAAAAGGTCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
CCTGCGGGAAAAATTCTCGTTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCAGCCGAACGGCTCGGCGAAGCACTGA
ATATTTACACGCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGCACAAACCCCGTATCGGCCATGATTGTC
TTTATTGACGGAAAACCGAATAAAAAGGAATATCGCAAATATAAAATTAAAACCGTAACAGGGCCGGACGATTACGGCTC
AATGAGGGAAGTCGTCAGAAGAAGATACACGAGGGTGCTCCGCGAAAATCTTCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGGCAGATTAACGCGGCGCGCGACGTGCTCGAGAATGAGCTCGGCCTTGATGTCCCGGTAGCGGGACTGGCG
AAAGATGATAAACACCGGACATCGAACCTTTTGATCGGCGACCCGCTTGAACCGGTGTTTCTGGAGCGGAACAGCCAAGA
GTTTTACCTGCTTCAGCGCATTCAGGACGAAGTTCACCGTTTTGCGATCAGCTTTCACAGACAGATCCGGGGAAAAAGCG
TCTTTCAATCCGTTCTGGATGATATCCCCGGAATCGGCGAAAAACGCAAAAAAATGCTCTTAAAACATTTCGGATCTGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATCAAAAAAGCCGGTGTGCCGGCCGCGGCGGCCCAGTTGCTGTTTGAAAA
ATTAAAAAAATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrB/uvrC motif (UVR)

(198-229)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.524

99.661

0.593
  uvrC Streptococcus pneumoniae R6

59.184

99.661

0.59
  uvrC Streptococcus pneumoniae D39

59.184

99.661

0.59