Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H7F31_RS03515 Genome accession   NZ_CP060293
Coordinates   881555..882118 (-) Length   187 a.a.
NCBI ID   WP_187103065.1    Uniprot ID   A0A7G8UQ98
Organism   Paenibacillus sp. PAMC21692     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 876555..887118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F31_RS03480 (H7F31_03480) - 877120..877380 (-) 261 WP_108993104.1 metal-sensitive transcriptional regulator -
  H7F31_RS03485 (H7F31_03485) - 877439..877918 (-) 480 WP_187103060.1 DsrE/DsrF/DrsH-like family protein -
  H7F31_RS03490 (H7F31_03490) - 877991..878215 (-) 225 WP_187103061.1 sulfurtransferase TusA family protein -
  H7F31_RS03495 (H7F31_03495) - 878254..878823 (-) 570 WP_315970570.1 sulfurtransferase TusA family protein -
  H7F31_RS03500 (H7F31_03500) - 878961..879740 (-) 780 WP_187103063.1 sulfite exporter TauE/SafE family protein -
  H7F31_RS03505 (H7F31_03505) - 879832..880983 (-) 1152 WP_187103064.1 MBL fold metallo-hydrolase -
  H7F31_RS03510 (H7F31_03510) rpsR 881243..881527 (-) 285 WP_087568496.1 30S ribosomal protein S18 -
  H7F31_RS03515 (H7F31_03515) ssbA 881555..882118 (-) 564 WP_187103065.1 single-stranded DNA-binding protein Machinery gene
  H7F31_RS03520 (H7F31_03520) rpsF 882154..882438 (-) 285 WP_087568498.1 30S ribosomal protein S6 -
  H7F31_RS03525 (H7F31_03525) - 882597..883562 (-) 966 WP_187103066.1 ABC transporter substrate-binding protein -
  H7F31_RS03530 (H7F31_03530) - 883729..885291 (-) 1563 WP_187103067.1 AraC family transcriptional regulator -
  H7F31_RS03535 (H7F31_03535) - 885484..885666 (+) 183 WP_087572553.1 YjzC family protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19783.44 Da        Isoelectric Point: 4.8857

>NTDB_id=475491 H7F31_RS03515 WP_187103065.1 881555..882118(-) (ssbA) [Paenibacillus sp. PAMC21692]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFSSAGQGGEREREADFIPIVTWRQLAETCANYLRKGRLAAVEGR
IQVRNYENNEGKRVYVTEVIADNVRFLESNRENSGAPRDENSGGGGGYGGGNSGGGYSGGSNAGGGGGSSYGGGSRSGGS
RNDGNSNSDPFKDDGRPIDISEDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=475491 H7F31_RS03515 WP_187103065.1 881555..882118(-) (ssbA) [Paenibacillus sp. PAMC21692]
ATGTTGAACCGTGTCATACTGATTGGCAGATTGACGAGGGATCCCGAGCTGCGTTATACGCCTGCCGGAGTTGCGGTAAC
GCAATTCACGCTAGCTGTAGACCGGCCATTCTCGTCAGCAGGTCAAGGCGGAGAACGCGAGCGCGAAGCGGATTTCATTC
CGATCGTTACATGGCGCCAGCTGGCTGAAACATGCGCAAACTACTTACGCAAAGGCCGTTTAGCGGCCGTTGAAGGACGC
ATTCAAGTGCGGAATTACGAGAACAATGAGGGCAAACGTGTGTATGTAACGGAAGTTATTGCAGACAATGTCCGGTTCCT
GGAGTCCAATCGCGAGAACAGCGGAGCTCCGCGTGATGAGAACAGCGGCGGTGGAGGCGGATACGGCGGCGGCAATTCGG
GCGGCGGATACAGTGGAGGAAGCAATGCTGGCGGTGGCGGTGGTTCATCCTATGGCGGCGGAAGCCGTTCGGGCGGATCG
CGCAACGACGGCAATAGCAACAGCGATCCTTTCAAGGATGACGGACGTCCAATCGACATTTCCGAAGATGATTTACCATT
TTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8UQ98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.915

100

0.572
  ssb Latilactobacillus sakei subsp. sakei 23K

43.316

100

0.433