Detailed information NTG0475426

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: H7F24_RS02390
• Genome accession: NZ_CP060290
• Coordinates: 442590..443987 (-)
• Length: 465 a.a.
• NCBI ID: WP_142927723.1
• Uniprot ID: -
• Organism: Bacillus sp. PAMC22265
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 437590..448987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7F24_RS02355 (H7F24_02355)	flgL	437790..438698 (-)	909	WP_024423617.1	flagellar hook-associated protein FlgL	-
H7F24_RS02360 (H7F24_02360)	flgK	438708..440228 (-)	1521	WP_024423618.1	flagellar hook-associated protein FlgK	-
H7F24_RS02365 (H7F24_02365)	-	440244..440726 (-)	483	WP_034623751.1	flagellar protein FlgN	-
H7F24_RS02370 (H7F24_02370)	flgM	440745..441008 (-)	264	WP_024423620.1	flagellar biosynthesis anti-sigma factor FlgM	-
H7F24_RS02375 (H7F24_02375)	-	441088..441507 (-)	420	WP_024423621.1	TIGR03826 family flagellar region protein	-
H7F24_RS02380 (H7F24_02380)	comFC	441565..442221 (-)	657	WP_253207496.1	ComF family protein	Machinery gene
H7F24_RS02385 (H7F24_02385)	-	442248..442541 (-)	294	WP_024423623.1	late competence development ComFB family protein	-
H7F24_RS02390 (H7F24_02390)	comFA	442590..443987 (-)	1398	WP_142927723.1	DEAD/DEAH box helicase	Machinery gene
H7F24_RS02395 (H7F24_02395)	-	444108..444950 (-)	843	WP_024423625.1	DegV family protein	-
H7F24_RS02400 (H7F24_02400)	degU	445166..445855 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
H7F24_RS02405 (H7F24_02405)	degS	445920..447095 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator
H7F24_RS02410 (H7F24_02410)	-	447316..447984 (+)	669	WP_012011434.1	YigZ family protein	-

Sequence

Protein

• Length: 465 a.a.
• Molecular weight: 53208.16 Da
• Isoelectric Point: 10.0241

>NTDB_id=475426 H7F24_RS02390 WP_142927723.1 442590..443987(-) (comFA) [Bacillus sp. PAMC22265]
MNMDKAMELMRQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKGCVYC
RSCIMMGKAAECGFLYEWTGPQMVETCRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMRVCIATPRTDVVLELEPRLRKAFQGVTITVLYGGSSQRFQITPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNRGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHEQPLPVPTFHWIGHWKKKLKKNQLPPKVMNWMQ
RHIANRRRILLFVPSIATMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKEFSEKQCGFN

Nucleotide

• Length: 1398 bp

>NTDB_id=475426 H7F24_RS02390 WP_142927723.1 442590..443987(-) (comFA) [Bacillus sp. PAMC22265]
TTGAATATGGACAAAGCAATGGAACTAATGCGGCAGCTGCATTCACGCCATCTGCTCACCGTTGAAACAAAGTGCCCACA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAAGTGTGTCAAAAGGGTTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACATG
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCGTTA
AATCAAGGAATGAGGGTCTGTATTGCGACACCTAGAACAGATGTAGTGCTTGAACTCGAACCACGGCTTAGAAAAGCATT
TCAAGGGGTGACAATTACCGTACTTTACGGAGGCAGTTCTCAAAGGTTTCAAATAACACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACAGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGTGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCACGAGCAACCATTACCCGTAC
CGACCTTTCATTGGATCGGTCATTGGAAAAAGAAATTAAAAAAGAACCAGCTGCCCCCTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAGGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTACCATGAAGAAGGTAACGAAGATTCTTCG
AGAACAATCCTTAAATGTGGAGGGAGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACGATTCCAAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATATCTGGACGGGTAGGCAGACACCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (116-265)

• Helicase conserved C-terminal domain (Helicase_C) (324-420)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	52.412	98.065	0.514
comFA/cflA	Streptococcus pneumoniae Rx1	38.497	94.409	0.363
comFA/cflA	Streptococcus pneumoniae D39	38.497	94.409	0.363
comFA/cflA	Streptococcus pneumoniae R6	38.497	94.409	0.363
comFA/cflA	Streptococcus pneumoniae TIGR4	38.269	94.409	0.361