Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GGD92_RS24865 Genome accession   NZ_CP060289
Coordinates   5474599..5475927 (-) Length   442 a.a.
NCBI ID   WP_179599706.1    Uniprot ID   A0A7G8YIT2
Organism   Pseudomonas protegens strain H1F10A     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5469599..5480927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGD92_RS24830 (GGD92_24830) - 5470029..5470553 (-) 525 WP_179599694.1 GspH/FimT family protein -
  GGD92_RS24835 (GGD92_24835) pilV 5470940..5471383 (+) 444 WP_179599696.1 type IV pilus modification protein PilV -
  GGD92_RS24840 (GGD92_24840) - 5471380..5472090 (+) 711 WP_409565326.1 PilW family protein -
  GGD92_RS24845 (GGD92_24845) - 5472132..5472572 (+) 441 WP_179599698.1 PilX N-terminal domain-containing pilus assembly protein -
  GGD92_RS24850 (GGD92_24850) - 5472763..5473029 (+) 267 WP_179599700.1 hypothetical protein -
  GGD92_RS24855 (GGD92_24855) - 5473045..5473446 (+) 402 WP_179599702.1 type IV pilin protein -
  GGD92_RS24860 (GGD92_24860) thiO 5473502..5474602 (+) 1101 WP_179599704.1 glycine oxidase ThiO -
  GGD92_RS24865 (GGD92_24865) pilR 5474599..5475927 (-) 1329 WP_179599706.1 sigma-54-dependent transcriptional regulator Regulator
  GGD92_RS24870 (GGD92_24870) - 5476151..5476384 (-) 234 WP_016964306.1 PP0621 family protein -
  GGD92_RS24875 (GGD92_24875) - 5476511..5477533 (-) 1023 WP_016964307.1 outer membrane protein assembly factor BamD -
  GGD92_RS24880 (GGD92_24880) rluD 5477684..5478646 (+) 963 WP_016964308.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GGD92_RS24885 (GGD92_24885) pgeF 5478643..5479368 (+) 726 WP_016964309.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49628.16 Da        Isoelectric Point: 8.5266

>NTDB_id=475412 GGD92_RS24865 WP_179599706.1 5474599..5475927(-) (pilR) [Pseudomonas protegens strain H1F10A]
MNPQHRALVVDETREIRSVLEITLGRMRLHTQSARSLQEARSHLAREHFDLCLTDLHLPDGSGLELLQHIRRHHPQLPVA
LLSHEAGAPTSALNGGTCDLLPKPLDLKRLRDWVATALKRQHACAATHASEQLPGDSPPMVMLRRHIAKLAASLAPVYIS
GESGSGKERVARLIHQSGPRGAQPFVPVNCGAIPNELMESEFFGHRKGSFSGALMDQPGLFRAAHGGTLFLDEIADLPLV
MQVKLLRALQEKSVRPVGTQQEQAVDVRILCATHKDLKSEVQAGRFRQDLFYRLNVIELRVPALRERRDDIGLLARHILQ
RLATTSDRPALELRPQALQALERYDFPGNVRELENLLERALALCESPWIEVADLNLPAPEPDDELAPGPLPHLDLARHLQ
QVERQLLLQTLEQTRWNRTEAARRLSLSLRSMRYRMKKLGLD

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=475412 GGD92_RS24865 WP_179599706.1 5474599..5475927(-) (pilR) [Pseudomonas protegens strain H1F10A]
ATGAATCCACAGCACAGAGCGCTGGTGGTCGATGAGACCAGGGAAATCCGCTCCGTGCTGGAGATCACCCTGGGCCGCAT
GCGTCTGCACACCCAAAGCGCCCGCAGCCTGCAGGAAGCCCGCAGCCACCTGGCCCGGGAGCATTTCGACCTGTGCCTGA
CCGATCTGCATCTGCCGGACGGCAGCGGCCTGGAACTGCTGCAGCATATCCGCCGGCACCATCCCCAACTGCCGGTGGCC
CTGCTCAGCCACGAGGCCGGCGCGCCAACCAGCGCCCTGAATGGTGGAACCTGCGACCTATTGCCAAAGCCTCTGGACCT
CAAGCGCCTGCGGGACTGGGTGGCCACAGCTCTGAAACGACAACACGCCTGTGCTGCAACTCACGCCTCTGAGCAGTTGC
CGGGGGATTCGCCGCCCATGGTCATGCTGCGCCGGCACATCGCCAAACTGGCCGCCAGCCTCGCCCCGGTCTATATCAGC
GGCGAGTCCGGCAGCGGCAAGGAACGCGTCGCCCGATTGATCCACCAGTCCGGGCCCAGAGGCGCGCAGCCCTTTGTCCC
GGTCAACTGCGGGGCGATTCCCAACGAACTGATGGAGAGCGAGTTTTTCGGTCACCGCAAGGGCAGCTTCAGCGGCGCGC
TGATGGATCAGCCCGGACTGTTCCGGGCCGCTCATGGCGGCACCCTGTTCCTCGACGAGATCGCCGACCTGCCGCTGGTC
ATGCAGGTGAAACTGCTGCGAGCCCTGCAGGAAAAGTCGGTGCGTCCAGTGGGCACTCAGCAAGAACAGGCGGTGGATGT
GCGAATCCTCTGCGCGACCCACAAGGATCTGAAAAGCGAGGTGCAAGCCGGACGCTTCCGCCAGGACCTGTTTTATCGGC
TGAATGTCATCGAGTTGCGGGTTCCCGCCCTGCGCGAGCGTCGGGACGACATCGGGCTACTGGCGCGGCACATCCTCCAG
CGTCTGGCCACCACCAGTGACCGGCCGGCCCTAGAGTTGCGCCCGCAAGCGCTGCAAGCCCTGGAGCGCTACGACTTTCC
CGGCAATGTGCGTGAGCTGGAGAACCTGCTGGAGCGGGCCCTGGCCCTTTGCGAGAGTCCGTGGATCGAGGTGGCGGACC
TGAATTTACCGGCCCCCGAACCCGACGACGAGCTCGCGCCCGGGCCCCTCCCCCACCTCGATCTGGCGCGGCATCTGCAG
CAGGTGGAGCGCCAGTTGCTGCTGCAGACCCTGGAGCAAACCCGCTGGAACCGCACGGAGGCGGCCCGGCGGTTGAGCCT
GTCGCTGCGCTCAATGCGCTATCGCATGAAGAAGCTCGGACTGGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-113)

Sigma-54 interaction domain (Sigma54_activat)

(135-299)

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8YIT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.754

100

0.629
  pilR Acinetobacter baumannii strain A118

44.783

100

0.466