Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   H7683_RS12200 Genome accession   NZ_CP060288
Coordinates   2588422..2588829 (+) Length   135 a.a.
NCBI ID   WP_003458788.1    Uniprot ID   W6QSF7
Organism   Pseudomonas mendocina strain CPS5     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2583422..2593829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7683_RS12170 (H7683_12170) - 2583587..2584594 (-) 1008 WP_209450987.1 aspartate carbamoyltransferase catalytic subunit -
  H7683_RS12175 (H7683_12175) pyrR 2584606..2585109 (-) 504 WP_013713607.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  H7683_RS12180 (H7683_12180) ruvX 2585140..2585577 (-) 438 WP_026041869.1 Holliday junction resolvase RuvX -
  H7683_RS12185 (H7683_12185) - 2585574..2586143 (-) 570 WP_013713609.1 YqgE/AlgH family protein -
  H7683_RS12190 (H7683_12190) - 2586238..2587134 (-) 897 WP_013713610.1 energy transducer TonB -
  H7683_RS12195 (H7683_12195) gshB 2587223..2588179 (-) 957 WP_013713611.1 glutathione synthase -
  H7683_RS12200 (H7683_12200) pilG 2588422..2588829 (+) 408 WP_003458788.1 twitching motility response regulator PilG Regulator
  H7683_RS12205 (H7683_12205) pilH 2588877..2589242 (+) 366 WP_013713612.1 twitching motility response regulator PilH -
  H7683_RS12210 (H7683_12210) - 2589288..2589827 (+) 540 WP_013713613.1 chemotaxis protein CheW -
  H7683_RS12215 (H7683_12215) - 2589908..2591944 (+) 2037 WP_013713614.1 methyl-accepting chemotaxis protein -
  H7683_RS12220 (H7683_12220) - 2592005..2592865 (+) 861 WP_026041865.1 protein-glutamate O-methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14771.13 Da        Isoelectric Point: 6.7123

>NTDB_id=475376 H7683_RS12200 WP_003458788.1 2588422..2588829(+) (pilG) [Pseudomonas mendocina strain CPS5]
MEQHSEGLKVMVIDDSKTIRRTAETLLKKVGCDVITAVDGFDALAKIADTHPSIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKAHVPDFTPVEQAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=475376 H7683_RS12200 WP_003458788.1 2588422..2588829(+) (pilG) [Pseudomonas mendocina strain CPS5]
ATGGAACAGCATTCCGAGGGTTTGAAAGTGATGGTGATCGACGACTCGAAAACGATTCGTCGCACCGCCGAAACTCTGCT
GAAAAAAGTGGGTTGTGACGTCATCACCGCGGTCGATGGCTTCGATGCCCTGGCCAAGATTGCCGACACTCACCCCAGTA
TCATCTTTGTCGACATCATGATGCCGCGTCTCGATGGGTATCAGACCTGTGCCCTGATCAAGAACAACAGTGCCTTCAAA
TCCACCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCCGATCAATA
CCTGACCAAGCCCTTCAGCAAGGAAGAGCTGCTCGGTGCGATCAAAGCCCACGTGCCGGACTTCACCCCGGTGGAACAAG
CCTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6QSF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

92.593

0.704
  vicR Streptococcus mutans UA159

42.857

93.333

0.4