Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H7992_RS24460 Genome accession   NZ_CP060287
Coordinates   5085018..5085563 (+) Length   181 a.a.
NCBI ID   WP_067204120.1    Uniprot ID   -
Organism   Sporosarcina sp. resist     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5080018..5090563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7992_RS24430 (H7992_24430) yyaC 5080137..5080778 (-) 642 WP_187046284.1 spore protease YyaC -
  H7992_RS24435 (H7992_24435) - 5080853..5081743 (+) 891 WP_231885745.1 mechanosensitive ion channel family protein -
  H7992_RS24440 (H7992_24440) - 5081748..5081945 (+) 198 WP_067204109.1 DUF951 domain-containing protein -
  H7992_RS24445 (H7992_24445) ychF 5082112..5083212 (+) 1101 WP_067204112.1 redox-regulated ATPase YchF -
  H7992_RS24450 (H7992_24450) - 5083941..5084522 (-) 582 WP_187046285.1 DUF3267 domain-containing protein -
  H7992_RS24455 (H7992_24455) rpsF 5084671..5084958 (+) 288 WP_067204117.1 30S ribosomal protein S6 -
  H7992_RS24460 (H7992_24460) ssbA 5085018..5085563 (+) 546 WP_067204120.1 single-stranded DNA-binding protein Machinery gene
  H7992_RS24465 (H7992_24465) rpsR 5085607..5085843 (+) 237 WP_067204122.1 30S ribosomal protein S18 -
  H7992_RS24470 (H7992_24470) - 5086047..5086985 (+) 939 WP_187046286.1 YybS family protein -
  H7992_RS24475 (H7992_24475) - 5086998..5088974 (+) 1977 WP_067204127.1 DHH family phosphoesterase -
  H7992_RS24480 (H7992_24480) rplI 5088974..5089423 (+) 450 WP_187046287.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19864.58 Da        Isoelectric Point: 4.7915

>NTDB_id=475362 H7992_RS24460 WP_067204120.1 5085018..5085563(+) (ssbA) [Sporosarcina sp. resist]
MINRVVLVGRLTKDPELKYTQTGIAVTRFTLAVNRAFQSASGEREADFISCVAWRKQAENVANFLKKGSLVGVDGRIQTG
SFEGQDGKRVYTTEVVADSTQFLEPRNASGENRSGAGGGAPYQGSQQSEQPSYQNQQSNQQYKQSNQQSQQPNQQNYTRT
DDDPFSTGGGPIEVSDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=475362 H7992_RS24460 WP_067204120.1 5085018..5085563(+) (ssbA) [Sporosarcina sp. resist]
ATGATTAACCGAGTTGTTTTAGTAGGGCGATTGACAAAAGATCCTGAACTCAAGTATACACAAACCGGTATCGCTGTTAC
ACGTTTTACGTTAGCAGTAAACCGAGCTTTTCAAAGCGCTTCAGGCGAACGAGAAGCTGATTTCATCAGTTGTGTTGCTT
GGAGAAAACAGGCTGAAAACGTTGCAAACTTCTTGAAAAAGGGAAGTCTTGTCGGAGTAGATGGCCGTATTCAGACGGGC
AGCTTTGAAGGACAAGATGGAAAGCGTGTTTATACTACAGAAGTTGTAGCAGACAGCACACAATTTCTCGAACCGCGCAA
TGCATCTGGCGAAAATAGATCGGGAGCTGGCGGTGGGGCACCTTACCAAGGTTCTCAACAAAGCGAACAACCGAGCTATC
AGAATCAGCAGTCAAACCAACAATACAAACAATCTAACCAGCAATCTCAACAGCCTAATCAGCAAAATTACACACGTACT
GACGATGATCCATTCTCGACAGGCGGAGGTCCGATAGAAGTATCGGACGACGACCTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.011

100

0.58
  ssb Latilactobacillus sakei subsp. sakei 23K

53.039

100

0.53