Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   H7969_RS09650 Genome accession   NZ_CP060280
Coordinates   1915075..1915401 (-) Length   108 a.a.
NCBI ID   WP_061726839.1    Uniprot ID   -
Organism   Neisseria meningitidis strain LNP24198     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1910075..1920401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7969_RS09640 (H7969_09640) gnd 1910172..1911620 (-) 1449 WP_002221767.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  H7969_RS09645 (H7969_09645) lpxC 1913012..1913935 (-) 924 WP_002220060.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  H7969_RS09650 (H7969_09650) pilE 1915075..1915401 (-) 327 WP_061726839.1 pilin Machinery gene
  H7969_RS11945 (H7969_09655) - 1915448..1915810 (-) 363 Protein_1876 pilin -
  H7969_RS09660 (H7969_09660) - 1915839..1916168 (-) 330 WP_002220065.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  H7969_RS09665 (H7969_09665) - 1916421..1916618 (-) 198 WP_021439626.1 DUF2061 domain-containing protein -
  H7969_RS09670 (H7969_09670) - 1916740..1917693 (+) 954 WP_002220067.1 D-2-hydroxyacid dehydrogenase -
  H7969_RS09675 (H7969_09675) metG 1917771..1919825 (-) 2055 WP_002220069.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11869.68 Da        Isoelectric Point: 10.4872

>NTDB_id=475224 H7969_RS09650 WP_061726839.1 1915075..1915401(-) (pilE) [Neisseria meningitidis strain LNP24198]
MTGFNDAAGVASASDIKGKYVEKVEVKNGVVTAEMKSSGVNKEIQGKKLSLWAKRQDGSVKWFCGQPVARNDKADTDKID
TKHLPSTCRQPAVNLPRRSICRLRQIIP

Nucleotide


Download         Length: 327 bp        

>NTDB_id=475224 H7969_RS09650 WP_061726839.1 1915075..1915401(-) (pilE) [Neisseria meningitidis strain LNP24198]
ATGACGGGATTTAATGATGCCGCCGGCGTGGCATCCGCCTCCGACATCAAAGGCAAATATGTTGAGAAAGTTGAAGTCAA
AAACGGCGTCGTTACCGCCGAAATGAAATCAAGCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCA
AGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTGCGCGCAACGACAAAGCCGACACCGACAAAATCGAC
ACCAAGCACCTGCCGTCAACCTGCCGTCAACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGATTAAGGCAAATTAT
ACCATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

75.824

84.259

0.639
  pilE Neisseria gonorrhoeae MS11

68.421

87.963

0.602