Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H7969_RS08745 Genome accession   NZ_CP060280
Coordinates   1747758..1748222 (-) Length   154 a.a.
NCBI ID   WP_011799029.1    Uniprot ID   -
Organism   Neisseria meningitidis strain LNP24198     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1742758..1753222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7969_RS08715 (H7969_08715) - 1743507..1744562 (-) 1056 WP_002221681.1 DNA cytosine methyltransferase -
  H7969_RS08720 (H7969_08720) - 1744968..1745093 (-) 126 Protein_1695 IS5/IS1182 family transposase -
  H7969_RS08725 (H7969_08725) - 1745183..1746148 (+) 966 WP_002221064.1 IS30-like element IS1655 family transposase -
  H7969_RS08730 (H7969_08730) - 1746174..1746524 (-) 351 Protein_1697 IS5/IS1182 family transposase -
  H7969_RS11905 (H7969_08735) - 1746863..1747131 (+) 269 Protein_1698 5'-nucleotidase -
  H7969_RS08740 (H7969_08740) comP 1747221..1747670 (-) 450 WP_002221685.1 type IV pilin protein Machinery gene
  H7969_RS08745 (H7969_08745) comE 1747758..1748222 (-) 465 WP_011799029.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16519.75 Da        Isoelectric Point: 10.9695

>NTDB_id=475221 H7969_RS08745 WP_011799029.1 1747758..1748222(-) (comE) [Neisseria meningitidis strain LNP24198]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPAIPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=475221 H7969_RS08745 WP_011799029.1 1747758..1748222(-) (comE) [Neisseria meningitidis strain LNP24198]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734