Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JR883_RS05570 Genome accession   NZ_CP070930
Coordinates   1160837..1161574 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 30COLEC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1155837..1166574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR883_RS05540 (JR883_05540) yfiL 1155996..1156361 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  JR883_RS05545 (JR883_05545) aroF 1156571..1157641 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JR883_RS05550 (JR883_05550) tyrA 1157652..1158773 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JR883_RS05555 (JR883_05555) pheA 1158816..1159976 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  JR883_RS05560 (JR883_05560) pheL 1160074..1160121 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JR883_RS05565 (JR883_05565) raiA 1160225..1160566 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JR883_RS05570 (JR883_05570) comL 1160837..1161574 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JR883_RS05575 (JR883_05575) rluD 1161709..1162689 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JR883_RS05580 (JR883_05580) yfiH 1162686..1163417 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  JR883_RS05585 (JR883_05585) clpC 1163547..1166120 (+) 2574 WP_074478306.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=475112 JR883_RS05570 WP_000197686.1 1160837..1161574(-) (comL) [Escherichia coli strain 30COLEC]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=475112 JR883_RS05570 WP_000197686.1 1160837..1161574(-) (comL) [Escherichia coli strain 30COLEC]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376