Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DMSX03_RS04080 Genome accession   NZ_CP060271
Coordinates   909474..909893 (+) Length   139 a.a.
NCBI ID   WP_029377976.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain DMSX03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 904474..914893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMSX03_RS04050 atpD 904517..905929 (+) 1413 WP_029377979.1 F0F1 ATP synthase subunit beta -
  DMSX03_RS04055 - 905949..906353 (+) 405 WP_017722095.1 F0F1 ATP synthase subunit epsilon -
  DMSX03_RS04060 - 906693..906926 (+) 234 WP_017722096.1 DUF1146 family protein -
  DMSX03_RS04065 murA 907033..908298 (+) 1266 WP_029377978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DMSX03_RS04070 fabZ 908356..908793 (+) 438 WP_029377977.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DMSX03_RS04075 - 908843..909283 (-) 441 WP_017722099.1 YwpF-like family protein -
  DMSX03_RS04080 ssb 909474..909893 (+) 420 WP_029377976.1 single-stranded DNA-binding protein Machinery gene
  DMSX03_RS04085 - 910320..911015 (+) 696 WP_029377975.1 transglycosylase family protein -
  DMSX03_RS04090 tenA 911456..912136 (+) 681 WP_119610506.1 thiaminase II -
  DMSX03_RS04095 thiD 912138..912959 (+) 822 WP_107545722.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DMSX03_RS04100 thiM 912952..913740 (+) 789 WP_186335562.1 hydroxyethylthiazole kinase -
  DMSX03_RS04105 thiE 913743..914381 (+) 639 WP_081225106.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16163.58 Da        Isoelectric Point: 6.4617

>NTDB_id=475093 DMSX03_RS04080 WP_029377976.1 909474..909893(+) (ssb) [Staphylococcus xylosus strain DMSX03]
MINNIVIVGRLTKDPKIYEKEGNKLATMCVAITRNYKDKDQNTICDYLYCKAVGKIANNIELYLNKGSLVGITGQMQSRK
YEKEGQMHFVSELFIETIRFMSPRSKDEVNEFHEIFPIEQVCNSNKEKNLQDNEIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=475093 DMSX03_RS04080 WP_029377976.1 909474..909893(+) (ssb) [Staphylococcus xylosus strain DMSX03]
ATGATTAACAACATTGTCATAGTAGGGAGATTAACCAAAGACCCTAAAATTTATGAAAAGGAGGGGAATAAATTAGCTAC
AATGTGTGTAGCGATAACAAGAAATTATAAAGATAAGGATCAAAATACTATTTGTGATTATCTCTATTGTAAGGCAGTTG
GTAAAATAGCTAATAATATCGAACTATATTTAAATAAAGGATCACTTGTGGGTATCACTGGTCAAATGCAATCACGAAAA
TATGAAAAAGAAGGGCAGATGCATTTTGTATCGGAACTTTTTATTGAAACGATTAGATTTATGTCTCCGAGAAGCAAAGA
TGAAGTTAATGAATTTCATGAAATATTCCCTATAGAGCAAGTTTGTAATTCTAATAAAGAAAAAAATTTACAAGATAATG
AAATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

66.355

76.978

0.511
  ssb Staphylococcus aureus MW2

65.421

76.978

0.504