Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JR909_RS05830 Genome accession   NZ_CP070920
Coordinates   1184354..1185091 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 40EC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1179354..1190091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR909_RS05800 (JR909_05800) yfiL 1179513..1179878 (-) 366 WP_024194564.1 DUF2799 domain-containing protein -
  JR909_RS05805 (JR909_05805) aroF 1180087..1181157 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JR909_RS05810 (JR909_05810) tyrA 1181168..1182289 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JR909_RS05815 (JR909_05815) pheA 1182332..1183492 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  JR909_RS05820 (JR909_05820) pheL 1183591..1183638 (-) 48 WP_010723158.1 phe operon leader peptide -
  JR909_RS05825 (JR909_05825) raiA 1183742..1184083 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JR909_RS05830 (JR909_05830) comL 1184354..1185091 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JR909_RS05835 (JR909_05835) rluD 1185226..1186206 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JR909_RS05840 (JR909_05840) yfiH 1186203..1186934 (+) 732 WP_001543096.1 purine nucleoside phosphorylase YfiH -
  JR909_RS05845 (JR909_05845) clpC 1187064..1189637 (+) 2574 WP_001543094.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=475034 JR909_RS05830 WP_000197686.1 1184354..1185091(-) (comL) [Escherichia coli strain 40EC]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=475034 JR909_RS05830 WP_000197686.1 1184354..1185091(-) (comL) [Escherichia coli strain 40EC]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376