Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JR901_RS05875 Genome accession   NZ_CP070906
Coordinates   1218967..1219704 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 88COLEC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1213967..1224704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR901_RS05845 (JR901_05845) yfiL 1214125..1214490 (-) 366 WP_001301878.1 DUF2799 domain-containing protein -
  JR901_RS05850 (JR901_05850) aroF 1214700..1215770 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JR901_RS05855 (JR901_05855) tyrA 1215781..1216902 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JR901_RS05860 (JR901_05860) pheA 1216945..1218105 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  JR901_RS05865 (JR901_05865) pheL 1218204..1218251 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JR901_RS05870 (JR901_05870) raiA 1218355..1218696 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JR901_RS05875 (JR901_05875) comL 1218967..1219704 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JR901_RS05880 (JR901_05880) rluD 1219839..1220819 (+) 981 WP_000079091.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JR901_RS05885 (JR901_05885) yfiH 1220816..1221547 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  JR901_RS05890 (JR901_05890) clpC 1221677..1224250 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=474872 JR901_RS05875 WP_000197686.1 1218967..1219704(-) (comL) [Escherichia coli strain 88COLEC]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=474872 JR901_RS05875 WP_000197686.1 1218967..1219704(-) (comL) [Escherichia coli strain 88COLEC]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGAGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376