Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JR895_RS05715 Genome accession   NZ_CP070902
Coordinates   1178736..1179473 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 99COLEC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1173736..1184473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR895_RS05685 (JR895_05685) yfiL 1173894..1174259 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  JR895_RS05690 (JR895_05690) aroF 1174469..1175539 (+) 1071 WP_086586012.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JR895_RS05695 (JR895_05695) tyrA 1175550..1176671 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JR895_RS05700 (JR895_05700) pheA 1176714..1177874 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  JR895_RS05705 (JR895_05705) pheL 1177973..1178020 (-) 48 WP_010723158.1 phe operon leader peptide -
  JR895_RS05710 (JR895_05710) raiA 1178124..1178465 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JR895_RS05715 (JR895_05715) comL 1178736..1179473 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JR895_RS05720 (JR895_05720) rluD 1179608..1180588 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JR895_RS05725 (JR895_05725) yfiH 1180585..1181316 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  JR895_RS05730 (JR895_05730) clpC 1181446..1184019 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=474790 JR895_RS05715 WP_000197686.1 1178736..1179473(-) (comL) [Escherichia coli strain 99COLEC]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=474790 JR895_RS05715 WP_000197686.1 1178736..1179473(-) (comL) [Escherichia coli strain 99COLEC]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376