Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LCBD_RS13720 Genome accession   NC_017474
Coordinates   2765639..2766832 (-) Length   397 a.a.
NCBI ID   WP_012492055.1    Uniprot ID   A0AB36XCN2
Organism   Lacticaseibacillus paracasei     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2760639..2771832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCBD_RS13705 (LCBD_2834) - 2761481..2762683 (+) 1203 WP_012492052.1 PLP-dependent aminotransferase family protein -
  LCBD_RS13710 (LCBD_2836) - 2762928..2764790 (-) 1863 WP_012492053.1 MFS transporter -
  LCBD_RS13715 (LCBD_2837) - 2764949..2765524 (+) 576 WP_012492054.1 TetR/AcrR family transcriptional regulator -
  LCBD_RS13720 (LCBD_2838) recA 2765639..2766832 (-) 1194 WP_012492055.1 recombinase RecA Machinery gene
  LCBD_RS13725 (LCBD_2839) - 2767233..2767931 (+) 699 WP_003567846.1 DUF554 domain-containing protein -
  LCBD_RS13730 (LCBD_2841) - 2768089..2768562 (-) 474 WP_003567848.1 hypothetical protein -
  LCBD_RS17485 (LCBD_2842) - 2768758..2769096 (-) 339 WP_003658790.1 hypothetical protein -
  LCBD_RS13735 (LCBD_2843) - 2769145..2771127 (-) 1983 WP_012492056.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 43000.64 Da        Isoelectric Point: 5.0732

>NTDB_id=47473 LCBD_RS13720 WP_012492055.1 2765639..2766832(-) (recA) [Lacticaseibacillus paracasei]
MAKKTTAKNDNTKSDATDRDTELEKALQKIKKAFGEGAVMKMGDRPELKVDVVSTGILSLDLALGVGGLPRGRIVEVYGP
ESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVA
ALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKR
GQQVKDGKDVVGFASKLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGKERLGQGLV
NASHYLDEHPEISKEIEEKIREQVAPKKPEETDEKQDDKKDDQASADKKSENTTTTDTEKKADKKDDPASFGVDRLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=47473 LCBD_RS13720 WP_012492055.1 2765639..2766832(-) (recA) [Lacticaseibacillus paracasei]
ATGGCTAAGAAAACGACCGCAAAGAATGATAATACTAAATCTGATGCTACAGATCGCGATACCGAACTAGAAAAAGCCCT
TCAGAAGATCAAGAAAGCCTTTGGTGAAGGTGCCGTCATGAAGATGGGCGATCGACCGGAACTGAAGGTTGATGTCGTCT
CAACAGGCATTTTATCCTTGGATCTTGCACTCGGTGTCGGCGGGTTACCGCGTGGCCGAATCGTTGAAGTCTATGGTCCT
GAAAGTACCGGGAAAACAACGATTGCGTTGCAGACTATTGCCGAATTGCAGAAATCAGGCGGCAAGGCGGCTTACATTGA
CGCCGAAAATGCGATGGATCCGAAGTATGCGGCGGAACTTGGCGTAAATATTGACGACTTACTGTTGTCTCAGCCAAACT
CTGGGGAACAGGGGCTTGAAATTGCTGAAATGCTGATTGAATCAGCGGCTGTTGATATTGTTGTCATTGACTCTGTCGCA
GCCTTGGTTCCCAAGGCTGAAATTGAAGGTGCCATCGGGGATAGCCATGTGGGCTTGCAAGCCCGGCTGATGTCGCAGGC
ACTGCGGAAGATGGCCGGTTCGATCAACAATACCAATACGCTGGTTATTTTCATTAACCAATTGCGTGAAAAAGTTGGCG
TGATGTTTGGCAACCCAGAAGTGACACCGGGCGGCCGTGCCTTGAAATTCTATGCGTCTGTACGGATTGAAGTCAAGCGC
GGGCAGCAGGTGAAAGACGGCAAAGATGTTGTCGGCTTCGCTAGCAAACTGAAAGTCACTAAGAATAAGGTCGCACCGCC
GTTTAAATCGGTTGAAACCACGATGTCATTTGGTCACGGGATTGAACACAATACCGATATGATTAACTTGGCAACCGATA
AAGACAATGACATTGACGTCATCACCAAGTCTGGCTCTTGGTATAACTATGGCAAGGAACGTTTGGGCCAAGGACTTGTC
AACGCATCTCACTACTTGGATGAACATCCGGAAATTTCTAAGGAAATTGAAGAAAAGATTCGTGAACAAGTTGCGCCAAA
GAAGCCTGAAGAAACCGATGAGAAGCAGGATGATAAGAAAGACGATCAGGCATCTGCTGATAAAAAGAGCGAAAATACAA
CGACCACTGATACTGAAAAGAAAGCCGACAAGAAAGATGACCCTGCCAGCTTCGGGGTTGATCGTCTTGTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

57.143

95.214

0.544
  recA Streptococcus mitis SK321

56.878

95.214

0.542
  recA Streptococcus mutans UA159

56.836

93.955

0.534
  recA Streptococcus pneumoniae TIGR4

57.493

92.443

0.531
  recA Streptococcus pneumoniae D39

57.493

92.443

0.531
  recA Streptococcus pneumoniae Rx1

57.493

92.443

0.531
  recA Streptococcus pneumoniae R6

57.493

92.443

0.531
  recA Streptococcus pyogenes NZ131

59.71

86.902

0.519
  recA Latilactobacillus sakei subsp. sakei 23K

62.963

81.612

0.514
  recA Bacillus subtilis subsp. subtilis str. 168

61.774

82.368

0.509
  recA Lactococcus lactis subsp. cremoris KW2

58.892

86.398

0.509
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.598

85.894

0.486
  recA Glaesserella parasuis strain SC1401

51.07

94.207

0.481
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.672

89.169

0.479
  recA Acinetobacter baylyi ADP1

54.81

86.398

0.474
  recA Pseudomonas stutzeri DSM 10701

58.075

81.108

0.471
  recA Ralstonia pseudosolanacearum GMI1000

58.413

79.345

0.463
  recA Acinetobacter baumannii D1279779

55.657

82.368

0.458
  recA Neisseria gonorrhoeae MS11

57.643

79.093

0.456
  recA Neisseria gonorrhoeae MS11

57.643

79.093

0.456
  recA Neisseria gonorrhoeae strain FA1090

57.643

79.093

0.456
  recA Vibrio cholerae O1 biovar El Tor strain E7946

53.211

82.368

0.438
  recA Vibrio cholerae strain A1552

53.211

82.368

0.438
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.469

81.612

0.428
  recA Helicobacter pylori 26695

51.368

82.872

0.426
  recA Helicobacter pylori strain NCTC11637

51.524

82.62

0.426

Multiple sequence alignment