Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   I653_RS08790 Genome accession   NC_020832
Coordinates   1733638..1734069 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis str. BAB-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1728638..1739069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I653_RS08770 (I653_08710) spoVS 1729200..1729460 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  I653_RS08775 (I653_08715) tdh 1729725..1730768 (+) 1044 WP_015483237.1 L-threonine 3-dehydrogenase -
  I653_RS08780 (I653_08720) kbl 1730781..1731959 (+) 1179 WP_015383694.1 glycine C-acetyltransferase -
  I653_RS08785 (I653_08725) miaB 1732107..1733636 (+) 1530 WP_015483238.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  I653_RS08790 (I653_08730) ymcA 1733638..1734069 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  I653_RS08795 (I653_08735) cotE 1734331..1734876 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  I653_RS08800 (I653_08740) hexA 1735009..1737585 (+) 2577 WP_015483239.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=47472 I653_RS08790 WP_003231834.1 1733638..1734069(+) (ymcA) [Bacillus subtilis subsp. subtilis str. BAB-1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=47472 I653_RS08790 WP_003231834.1 1733638..1734069(+) (ymcA) [Bacillus subtilis subsp. subtilis str. BAB-1]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1