Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JW305_RS17805 Genome accession   NZ_CP070593
Coordinates   3383057..3383794 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ESC53083     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3378057..3388794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW305_RS17790 (JW305_17790) clpC 3378511..3381084 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  JW305_RS17795 (JW305_17795) yfiH 3381214..3381945 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  JW305_RS17800 (JW305_17800) rluD 3381942..3382922 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JW305_RS17805 (JW305_17805) comL 3383057..3383794 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JW305_RS17810 (JW305_17810) raiA 3384064..3384405 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JW305_RS17815 (JW305_17815) pheL 3384509..3384556 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JW305_RS17820 (JW305_17820) pheA 3384655..3385815 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  JW305_RS17825 (JW305_17825) tyrA 3385858..3386979 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JW305_RS17830 (JW305_17830) aroF 3386990..3388060 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JW305_RS17835 (JW305_17835) yfiL 3388270..3388635 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=474575 JW305_RS17805 WP_000197686.1 3383057..3383794(+) (comL) [Escherichia coli strain ESC53083]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=474575 JW305_RS17805 WP_000197686.1 3383057..3383794(+) (comL) [Escherichia coli strain ESC53083]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376