Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GGI48_RS17430 Genome accession   NZ_CP060201
Coordinates   3754928..3755332 (+) Length   134 a.a.
NCBI ID   WP_016964938.1    Uniprot ID   A0A2T6GL00
Organism   Pseudomonas protegens strain H1F5C     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3749928..3760332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGI48_RS17405 (GGI48_17405) pyrR 3750909..3751415 (-) 507 WP_016964943.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  GGI48_RS17410 (GGI48_17410) ruvX 3751532..3751969 (-) 438 WP_016964942.1 Holliday junction resolvase RuvX -
  GGI48_RS17415 (GGI48_17415) - 3751969..3752538 (-) 570 WP_016964941.1 YqgE/AlgH family protein -
  GGI48_RS17420 (GGI48_17420) - 3752693..3753592 (-) 900 WP_047306488.1 energy transducer TonB -
  GGI48_RS17425 (GGI48_17425) gshB 3753722..3754693 (-) 972 WP_016964939.1 glutathione synthase -
  GGI48_RS17430 (GGI48_17430) pilG 3754928..3755332 (+) 405 WP_016964938.1 twitching motility response regulator PilG Regulator
  GGI48_RS17435 (GGI48_17435) pilH 3755390..3755755 (+) 366 WP_042941009.1 twitching motility response regulator PilH -
  GGI48_RS17440 (GGI48_17440) - 3755766..3756305 (+) 540 WP_016964936.1 chemotaxis protein CheW -
  GGI48_RS17445 (GGI48_17445) - 3756446..3758509 (+) 2064 WP_047306486.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14750.31 Da        Isoelectric Point: 7.3848

>NTDB_id=474565 GGI48_RS17430 WP_016964938.1 3754928..3755332(+) (pilG) [Pseudomonas protegens strain H1F5C]
MEQHSNALKVMVIDDSKTIRRTAEMLLKNVGCEVITAVDGFEALAKIVDHHPGIIFVDIMMPRLDGYQTCALVKNHSAFK
SIPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPDFVALAPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=474565 GGI48_RS17430 WP_016964938.1 3754928..3755332(+) (pilG) [Pseudomonas protegens strain H1F5C]
ATGGAACAGCATTCCAACGCCTTGAAGGTGATGGTGATCGACGATTCGAAGACGATTCGCCGCACGGCCGAAATGCTGTT
GAAGAACGTCGGCTGCGAGGTCATTACCGCCGTGGACGGTTTCGAGGCCCTGGCCAAGATCGTCGATCATCATCCCGGCA
TCATCTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGTGCGCTGGTGAAGAACCACAGCGCGTTCAAG
TCCATCCCCGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGCTCCGACCAGTT
TTTGACCAAACCCTTCAGCAAGGAAGAACTGCTGAGCGCAATCAAGGCCCACGTTCCGGACTTTGTCGCGCTTGCGCCAC
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T6GL00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

93.284

0.701
  vicR Streptococcus mutans UA159

42.735

87.313

0.373