Detailed information NTG0474555

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: GGI48_RS05905
• Genome accession: NZ_CP060201
• Coordinates: 1266131..1268347 (-)
• Length: 738 a.a.
• NCBI ID: WP_179597454.1
• Uniprot ID: A0A7G7XFF7
• Organism: Pseudomonas protegens strain H1F5C
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1261131..1273347

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GGI48_RS05870 (GGI48_05870)	murB	1261493..1262512 (-)	1020	WP_179597450.1	UDP-N-acetylmuramate dehydrogenase	-
GGI48_RS05875 (GGI48_05875)	-	1262509..1262973 (-)	465	WP_016968265.1	low molecular weight protein-tyrosine-phosphatase	-
GGI48_RS05880 (GGI48_05880)	kdsB	1262973..1263737 (-)	765	WP_179597452.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
GGI48_RS05885 (GGI48_05885)	-	1263734..1263919 (-)	186	WP_011060103.1	Trm112 family protein	-
GGI48_RS05890 (GGI48_05890)	lpxK	1263943..1264953 (-)	1011	WP_016968263.1	tetraacyldisaccharide 4'-kinase	-
GGI48_RS05895 (GGI48_05895)	-	1264953..1265381 (-)	429	WP_016968262.1	ExbD/TolR family protein	-
GGI48_RS05900 (GGI48_05900)	exbB	1265378..1266013 (-)	636	WP_016968261.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
GGI48_RS05905 (GGI48_05905)	comA	1266131..1268347 (-)	2217	WP_179597454.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
GGI48_RS05910 (GGI48_05910)	-	1268487..1269002 (+)	516	WP_016968259.1	DUF2062 domain-containing protein	-
GGI48_RS05915 (GGI48_05915)	-	1269056..1269835 (-)	780	WP_016968258.1	ABC transporter permease	-
GGI48_RS05920 (GGI48_05920)	-	1269832..1270764 (-)	933	WP_179597456.1	ABC transporter ATP-binding protein	-
GGI48_RS05925 (GGI48_05925)	-	1270897..1271520 (-)	624	WP_179597457.1	glutathione S-transferase family protein	-
GGI48_RS05930 (GGI48_05930)	-	1271563..1272222 (-)	660	WP_179597459.1	transglutaminase family protein	-

Sequence

Protein

• Length: 738 a.a.
• Molecular weight: 80929.33 Da
• Isoelectric Point: 11.5032

>NTDB_id=474555 GGI48_RS05905 WP_179597454.1 1266131..1268347(-) (comA) [Pseudomonas protegens strain H1F5C]
MGTGLLALAAGLLALGFLPVLPPVWLLLALAVVGMMLLPFRTHPVAFFLFGFAWACVSGHWALDDRLAPGLEGQTRWLEG
QVSGLPEQGQGVVRFELQAAQARRERLPQRMRLAWHDGPPLHSGERWRLAVKLRRPAGLLNVQGFDYQAWLLARRIGATG
TVKAGQLLRPARLAWREGLRQRLLGVEAQGRGAGLAALVMGDGSGLTRQDWQVLQDTGTVHLMVISGQHISLLAGVIYLG
VAGLARWGIWPERRPWLPWACALAFLGALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGVWRPWLLALNAVLLFEPL
ASLQPGFWLSFAAVAILILTFAGRLGRWRWWQAWSRAQWLIAIGLLPPLLALGLPISFSGPLANLLAVPWISLLVLPPAL
LGCLLLPVPHLGEGLLWLAGGLLDGLFRLLGMIASAWPAWVAPLLPWWLWGLSALGALLLLLPTGVPLRVLGWPLLLLAV
WPPEPVLPEGEVEVWQLDVGQGLSMLLRTRDHAMLYDAGARVGDFDLGERVVLPTLRKLGIRRLDLMLLSHADNDHAGAA
LAVWRGIEVARVRSGEPGALPDALQAQPCESGLGWQWNGVRFRLWQWPAATDGNQASCVLQVEARGERLLLTGDIDLQAE
RALLASALAVHTHWLQAPHHGSRTSSSMALLQRLRPTAVLISRGRGNAFGHPHAEVLARYRRLGAAVHDSADQGALKLRL
GTFGPVQSLRAQRRFWRD

Nucleotide

• Length: 2217 bp

>NTDB_id=474555 GGI48_RS05905 WP_179597454.1 1266131..1268347(-) (comA) [Pseudomonas protegens strain H1F5C]
ATGGGCACGGGTTTGCTGGCGTTGGCCGCGGGGCTGCTGGCGCTGGGTTTTCTGCCGGTGTTGCCGCCGGTCTGGCTGTT
GCTGGCGCTGGCGGTCGTGGGGATGATGCTGCTGCCGTTTCGTACACATCCCGTGGCATTTTTTCTGTTCGGTTTCGCCT
GGGCTTGCGTCTCCGGGCATTGGGCCCTGGATGATCGCCTGGCGCCTGGCCTGGAGGGGCAAACCCGCTGGCTGGAGGGG
CAGGTCAGTGGTTTGCCGGAGCAGGGCCAGGGCGTGGTGCGCTTCGAACTGCAGGCCGCCCAGGCGCGGCGCGAGCGTCT
GCCGCAGCGGATGCGTCTGGCCTGGCATGACGGCCCACCGCTGCACAGTGGCGAGCGCTGGCGCTTGGCGGTCAAGCTGC
GGCGTCCCGCCGGGCTGCTCAATGTCCAGGGATTCGATTACCAGGCCTGGCTGCTGGCGCGGCGCATCGGGGCCACCGGT
ACGGTCAAGGCCGGGCAATTGCTCAGGCCCGCCCGGCTGGCCTGGCGTGAGGGGCTGCGCCAGCGCCTGCTGGGGGTCGA
GGCACAAGGACGTGGCGCCGGGCTGGCGGCACTGGTGATGGGCGACGGCTCGGGCCTGACGCGCCAGGACTGGCAGGTGT
TGCAGGACACCGGCACGGTGCACCTGATGGTGATTTCCGGTCAGCACATCAGTCTGCTGGCCGGGGTGATCTACCTCGGG
GTGGCCGGGCTCGCCCGCTGGGGCATCTGGCCCGAGCGCCGGCCATGGCTGCCCTGGGCCTGTGCCCTGGCCTTTCTCGG
GGCTCTGGGCTATGGCCTGCTGGCCGGGTTCGATGTGCCGGTGCAACGGGCTTGCGTGATGGTCGCCCTGGTCCTGCTCT
GGCGTCTGCGCTTTCGCCATCTGGGCGTCTGGCGACCCTGGCTGCTGGCGTTGAATGCGGTGTTGCTGTTCGAGCCCCTG
GCCAGTTTGCAGCCGGGATTCTGGCTGTCGTTTGCCGCGGTGGCGATCCTGATTCTCACCTTCGCCGGGCGCCTGGGGCG
CTGGCGCTGGTGGCAGGCCTGGAGCCGGGCCCAGTGGCTGATCGCCATTGGCCTGCTGCCGCCGCTGCTGGCCCTGGGGT
TGCCCATCAGTTTCAGCGGTCCCCTGGCCAATCTGCTGGCGGTGCCCTGGATCAGCCTGTTGGTGCTGCCGCCGGCCCTG
CTGGGGTGTCTGCTGCTGCCGGTGCCCCATCTGGGCGAGGGCTTGCTGTGGTTGGCCGGGGGGCTGCTGGATGGGCTGTT
TCGCCTATTGGGGATGATCGCCAGTGCCTGGCCGGCCTGGGTGGCGCCGTTGCTGCCCTGGTGGCTTTGGGGGCTCAGTG
CCCTGGGGGCCTTGCTGTTGCTCCTGCCCACTGGTGTGCCGCTGCGGGTGCTGGGGTGGCCGCTGCTGCTATTGGCTGTC
TGGCCGCCCGAGCCCGTGCTGCCCGAGGGTGAGGTGGAGGTCTGGCAACTGGACGTGGGGCAGGGGCTGTCGATGCTCCT
GCGCACCCGCGATCACGCCATGCTCTACGACGCTGGCGCCCGGGTGGGGGATTTCGACCTTGGCGAGCGGGTGGTGCTGC
CAACCTTGCGCAAGTTGGGGATCAGGCGGTTGGACCTGATGCTGCTCAGTCACGCTGACAACGATCATGCCGGTGCCGCC
CTCGCGGTCTGGCGCGGAATCGAGGTGGCACGGGTGCGCAGCGGCGAGCCCGGGGCATTGCCCGACGCCTTGCAAGCCCA
GCCTTGCGAGTCCGGCCTGGGCTGGCAATGGAATGGGGTGCGCTTTCGGCTGTGGCAATGGCCGGCGGCGACCGATGGCA
ACCAGGCCTCCTGCGTGTTGCAGGTCGAGGCCCGTGGCGAGCGTCTGCTGCTCACCGGCGACATCGACCTGCAGGCCGAA
CGGGCCTTGCTCGCCAGTGCGCTGGCGGTTCACACCCACTGGTTGCAGGCGCCCCATCATGGCAGTCGCACGTCTTCGTC
CATGGCCCTGCTGCAACGCCTGCGACCGACGGCGGTGCTGATTTCCCGCGGGCGAGGCAATGCCTTCGGTCATCCCCATG
CCGAGGTGCTGGCGCGCTATCGACGGTTGGGGGCGGCTGTTCATGACAGCGCCGATCAAGGTGCGCTGAAACTGCGCCTG
GGGACTTTCGGGCCCGTGCAAAGCCTGCGCGCGCAGCGGCGTTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-679)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

3D structure

• AlphaFold DB: A0A7G7XFF7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.286	96.748	0.622
comA	Ralstonia pseudosolanacearum GMI1000	32.113	100	0.369