Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LCBD_RS00055 Genome accession   NC_017474
Coordinates   11568..12164 (+) Length   198 a.a.
NCBI ID   WP_012490752.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6568..17164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCBD_RS00035 (LCBD_0006) gyrA 7069..9690 (+) 2622 WP_003584054.1 DNA gyrase subunit A -
  LCBD_RS00040 (LCBD_0007) deoC 9795..10499 (-) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  LCBD_RS00045 (LCBD_0008) ssb 10682..11113 (+) 432 WP_003568458.1 single-stranded DNA-binding protein -
  LCBD_RS00050 (LCBD_0009) rpsF 11241..11537 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  LCBD_RS00055 (LCBD_0010) ssb 11568..12164 (+) 597 WP_012490752.1 single-stranded DNA-binding protein Machinery gene
  LCBD_RS00060 (LCBD_0011) rpsR 12251..12487 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  LCBD_RS00065 (LCBD_0012) - 12883..14508 (+) 1626 WP_014566347.1 polysaccharide biosynthesis protein -
  LCBD_RS00075 (LCBD_0014) - 15370..16848 (+) 1479 WP_014566348.1 cytochrome ubiquinol oxidase subunit I -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21112.84 Da        Isoelectric Point: 4.9056

>NTDB_id=47447 LCBD_RS00055 WP_012490752.1 11568..12164(+) (ssb) [Lacticaseibacillus paracasei]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEAANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=47447 LCBD_RS00055 WP_012490752.1 11568..12164(+) (ssb) [Lacticaseibacillus paracasei]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGATGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAAGCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.505

100

0.505

Multiple sequence alignment