Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   H7F25_RS09840 Genome accession   NZ_CP060191
Coordinates   1973644..1975377 (-) Length   577 a.a.
NCBI ID   WP_024428012.1    Uniprot ID   -
Organism   Bacillus sp. PAMC28571     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1968644..1980377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F25_RS09820 (H7F25_09820) - 1969520..1970620 (-) 1101 WP_024422933.1 Rap family tetratricopeptide repeat protein -
  H7F25_RS09825 (H7F25_09825) - 1970608..1970805 (-) 198 WP_024422934.1 hypothetical protein -
  H7F25_RS09830 (H7F25_09830) spo0A 1971077..1971880 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  H7F25_RS09835 (H7F25_09835) spoIVB 1972166..1973443 (-) 1278 WP_025092993.1 SpoIVB peptidase -
  H7F25_RS09840 (H7F25_09840) recN 1973644..1975377 (-) 1734 WP_024428012.1 DNA repair protein RecN Machinery gene
  H7F25_RS09845 (H7F25_09845) ahrC 1975411..1975860 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  H7F25_RS09850 (H7F25_09850) - 1976230..1977084 (-) 855 WP_044334062.1 TlyA family RNA methyltransferase -
  H7F25_RS09855 (H7F25_09855) dxs 1977081..1978982 (-) 1902 WP_185853678.1 1-deoxy-D-xylulose-5-phosphate synthase -
  H7F25_RS09860 (H7F25_09860) - 1979133..1980029 (-) 897 WP_198422863.1 polyprenyl synthetase family protein -
  H7F25_RS09865 (H7F25_09865) - 1980013..1980273 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64669.48 Da        Isoelectric Point: 4.7708

>NTDB_id=474361 H7F25_RS09840 WP_024428012.1 1973644..1975377(-) (recN) [Bacillus sp. PAMC28571]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEDIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELDQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=474361 H7F25_RS09840 WP_024428012.1 1973644..1975377(-) (recN) [Bacillus sp. PAMC28571]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTTCT
AACGGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGATCCTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCACCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATCCTCCGCCGTGATATTAATAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGGGAAGTAGGACGGCTTTTGCTTGATATACATGGACAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGACATTGCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCCCAAAAGCTAAGGCAGCTGTCTGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGCTTC
AGGAAGAACGTCATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTCCAAAACGCGTATAACGCCTTGCGTAATGAG
CAAGGAGGGCTAGATTGGGTTGGTATGTCCTCAAGCGAGCTTGATCAGGTGTCTGAGATCAACGATGATTTGAAAAAGCT
ATCTGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACCTTCCAAATGCGGAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGCTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCATCTGCAGACGCT
CAAAAATAAATTAGATGCGATGAGCCGTGATGCCCTGCTCGAAGCACTTAACGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCGAAGCAAATTCAAACAGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCATTTGGCAGCACCGATTGTCCGCTATTAGACGGAAAACCTGTCCAGCTCGGGAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCTAAACAAGACGTCACATCCATTATTTTCGATGAAGTTGATACAGGC
GTCAGCGGCAGAGTGGCACAAGCCATTGCTGAGAAAATTTACAAAGTTGCGTCTGGATCACAAGTGCTCTGTATTACACA
TCTGCCTCAAGTAGCCGCAATGGCTGACACACATCTCTTCATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTAAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACTGAGCTGACAAAA
CAGCATGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.563

100

0.756