Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   H7F25_RS09830 Genome accession   NZ_CP060191
Coordinates   1971077..1971880 (-) Length   267 a.a.
NCBI ID   WP_024422935.1    Uniprot ID   A0AAX0Z9Q1
Organism   Bacillus sp. PAMC28571     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966077..1976880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F25_RS09810 (H7F25_09810) - 1968281..1968517 (+) 237 WP_024422931.1 DUF2627 domain-containing protein -
  H7F25_RS09815 (H7F25_09815) - 1968554..1969291 (-) 738 WP_024422932.1 glycerophosphodiester phosphodiesterase -
  H7F25_RS09820 (H7F25_09820) - 1969520..1970620 (-) 1101 WP_024422933.1 Rap family tetratricopeptide repeat protein -
  H7F25_RS09825 (H7F25_09825) - 1970608..1970805 (-) 198 WP_024422934.1 hypothetical protein -
  H7F25_RS09830 (H7F25_09830) spo0A 1971077..1971880 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  H7F25_RS09835 (H7F25_09835) spoIVB 1972166..1973443 (-) 1278 WP_025092993.1 SpoIVB peptidase -
  H7F25_RS09840 (H7F25_09840) recN 1973644..1975377 (-) 1734 WP_024428012.1 DNA repair protein RecN Machinery gene
  H7F25_RS09845 (H7F25_09845) ahrC 1975411..1975860 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29932.46 Da        Isoelectric Point: 6.3918

>NTDB_id=474360 H7F25_RS09830 WP_024422935.1 1971077..1971880(-) (spo0A) [Bacillus sp. PAMC28571]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=474360 H7F25_RS09830 WP_024422935.1 1971077..1971880(-) (spo0A) [Bacillus sp. PAMC28571]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAGTGCCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGACATTATTATGCCTCATTTAGACGGTCTTGCTGTACTAGAACGCCTCCGTGAAAACAATGAAATGACAAAACAG
CCAAGTGTGATTATGCTAACGGCATTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCCTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGCT
CTTCATCAATCCAAAACAGTGTTCTTCGTAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACCATT
ATTCATGAGATTGGCGTGCCCGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCAATTTCTATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACTAAAGTGTTGTACCCAGACATTGCAAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTCGCTTGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACTGTC
AGCATGTCAAAAGCGAAGCCAACCAATTCAGAATTTATTGCCATGGTAGCTGATCGTTTGCGATTAGAGCATAGAGCAAG
CTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884