Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   H5V40_RS09730 Genome accession   NZ_CP060182
Coordinates   2007226..2008488 (-) Length   420 a.a.
NCBI ID   WP_046039749.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain Lp-6     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2002226..2013488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5V40_RS09715 (H5V40_09625) - 2003271..2004077 (-) 807 WP_003641506.1 TIGR00282 family metallophosphoesterase -
  H5V40_RS09720 (H5V40_09630) rny 2004202..2005761 (-) 1560 WP_003644638.1 ribonuclease Y -
  H5V40_RS09725 (H5V40_09635) recA 2005992..2007134 (-) 1143 WP_003641504.1 recombinase RecA Machinery gene
  H5V40_RS09730 (H5V40_09640) cinA 2007226..2008488 (-) 1263 WP_046039749.1 competence/damage-inducible protein A Machinery gene
  H5V40_RS09735 (H5V40_09645) pgsA 2008760..2009344 (-) 585 WP_003641502.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H5V40_RS09740 (H5V40_09650) - 2009367..2010239 (-) 873 WP_253733961.1 RodZ domain-containing protein -
  H5V40_RS09745 (H5V40_09655) - 2010343..2011644 (-) 1302 WP_003644640.1 pitrilysin family protein -
  H5V40_RS09750 (H5V40_09660) - 2011641..2012906 (-) 1266 WP_046039757.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45109.21 Da        Isoelectric Point: 5.2393

>NTDB_id=474330 H5V40_RS09730 WP_046039749.1 2007226..2008488(-) (cinA) [Lactiplantibacillus plantarum strain Lp-6]
MQAEIIAVGTEILLGQITNTNSTYIARGLAELGIDSYYQTVVGDNRQRLSTVIEIAAQRNDLVILTGGLGPTKDDLTKQT
LAHYLNVALVEDQAAMQKITAWFATNDKVMTANNRLQALYPAGAQPLTNHNGMAVGAFYQSENSADFLLLPGPPRELAVM
FDSEAKPKLAAAYGEQAQIYSRVMRFYGISESELATRLQPLIDEQQAVTIAPYAKTNEVTLRLSAQAMTETAARGMIDKV
DHQIKATIGPYFYGYGDDNSLVTTVINQMIAAKLSITAAESLTAGLFQSTIGSVSGVSAIFPGGFVTYANEAKHQLVNVP
QAIIDAEGVVSEATAKAMASGAKQQLNTDVGISFTGVAGPGTLEGQPAGTVWIGLAYCDRPVKAKQYHFAGNRQQIRERS
VMAGLDLLRHALNEDTDLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=474330 H5V40_RS09730 WP_046039749.1 2007226..2008488(-) (cinA) [Lactiplantibacillus plantarum strain Lp-6]
ATGCAAGCAGAAATAATCGCGGTTGGTACCGAGATTTTACTGGGTCAGATTACGAACACGAATAGTACGTACATCGCACG
TGGATTGGCCGAATTAGGAATTGATAGCTATTATCAAACGGTGGTTGGTGATAATCGGCAACGTTTGTCGACCGTCATTG
AAATTGCGGCCCAGCGGAATGACTTAGTTATTTTAACGGGTGGTTTGGGGCCGACCAAGGATGACTTGACGAAGCAGACG
CTCGCGCATTATTTGAATGTTGCCTTGGTTGAAGATCAGGCAGCAATGCAAAAAATTACGGCCTGGTTTGCCACTAATGA
CAAAGTAATGACGGCCAACAACCGATTACAGGCATTGTATCCGGCAGGCGCGCAACCGTTGACTAATCATAACGGAATGG
CTGTTGGTGCGTTTTATCAGTCAGAAAATAGTGCTGATTTCTTGTTATTGCCAGGTCCACCCCGTGAGTTAGCCGTAATG
TTTGATTCTGAGGCAAAACCGAAATTGGCAGCTGCATATGGGGAACAAGCCCAAATCTATTCGCGAGTGATGCGTTTTTA
TGGCATCAGTGAGTCTGAATTGGCGACCCGGTTGCAACCCTTGATTGATGAACAGCAGGCGGTTACGATTGCACCCTATG
CCAAGACTAACGAGGTTACCCTCAGATTAAGTGCCCAAGCTATGACGGAAACGGCTGCAAGGGGAATGATCGACAAAGTT
GACCACCAGATCAAGGCTACCATTGGGCCGTACTTTTACGGTTATGGAGACGATAACTCGTTAGTTACTACTGTTATTAA
TCAAATGATTGCGGCTAAGCTGAGTATTACAGCCGCTGAAAGCTTAACAGCTGGGCTGTTTCAGAGTACCATCGGCAGTG
TGTCCGGGGTCTCCGCAATCTTTCCGGGCGGCTTTGTAACGTATGCGAATGAGGCCAAACATCAGCTAGTGAACGTTCCA
CAAGCAATTATTGACGCTGAGGGCGTGGTTTCAGAAGCGACCGCTAAGGCCATGGCGAGTGGTGCTAAGCAGCAGCTAAA
TACTGATGTTGGTATCAGTTTTACAGGCGTTGCCGGTCCAGGAACCTTGGAAGGTCAACCGGCTGGAACGGTATGGATTG
GTCTTGCTTACTGTGATCGACCCGTGAAGGCCAAGCAGTACCATTTTGCTGGTAATCGACAACAAATTCGGGAACGCAGT
GTGATGGCCGGGTTAGACCTATTGAGACATGCATTGAATGAAGATACGGACTTAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(260-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

48.349

100

0.488
  cinA Streptococcus pneumoniae TIGR4

48.113

100

0.486
  cinA Streptococcus pneumoniae Rx1

48.113

100

0.486
  cinA Streptococcus pneumoniae R6

48.113

100

0.486
  cinA Streptococcus pneumoniae D39

47.877

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.17

100

0.476
  cinA Streptococcus mutans UA159

47.711

98.81

0.471
  cinA Bacillus subtilis subsp. subtilis str. 168

44.31

98.333

0.436
  cinA Streptococcus suis isolate S10

39.423

99.048

0.39