Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | H6Y62_RS06680 | Genome accession | NZ_CP060160 |
| Coordinates | 1388752..1389726 (+) | Length | 324 a.a. |
| NCBI ID | WP_037555185.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain MBAZ2 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1383752..1394726
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H6Y62_RS06645 (H6Y62_06645) | rpmG | 1384176..1384325 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| H6Y62_RS06650 (H6Y62_06650) | - | 1384575..1385111 (+) | 537 | WP_002459008.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| H6Y62_RS06655 (H6Y62_06655) | - | 1385128..1386585 (+) | 1458 | WP_002491909.1 | rhomboid family protein | - |
| H6Y62_RS06660 (H6Y62_06660) | - | 1386569..1386772 (+) | 204 | WP_002459010.1 | YqgQ family protein | - |
| H6Y62_RS06665 (H6Y62_06665) | - | 1386769..1387755 (+) | 987 | WP_002491907.1 | ROK family glucokinase | - |
| H6Y62_RS06670 (H6Y62_06670) | - | 1387755..1388078 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| H6Y62_RS06675 (H6Y62_06675) | - | 1388082..1388705 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| H6Y62_RS06680 (H6Y62_06680) | comGA | 1388752..1389726 (+) | 975 | WP_037555185.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| H6Y62_RS06685 (H6Y62_06685) | comGB | 1389698..1390762 (+) | 1065 | WP_002478130.1 | competence type IV pilus assembly protein ComGB | - |
| H6Y62_RS06690 (H6Y62_06690) | comGC | 1390777..1391091 (+) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| H6Y62_RS06695 (H6Y62_06695) | comGD | 1391024..1391518 (+) | 495 | WP_225306455.1 | competence type IV pilus minor pilin ComGD | - |
| H6Y62_RS06700 (H6Y62_06700) | - | 1391505..1391798 (+) | 294 | WP_002459018.1 | hypothetical protein | - |
| H6Y62_RS06705 (H6Y62_06705) | - | 1391860..1392219 (+) | 360 | WP_002459019.1 | competence type IV pilus minor pilin ComGF | - |
| H6Y62_RS06710 (H6Y62_06710) | - | 1392373..1392891 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| H6Y62_RS06715 (H6Y62_06715) | gcvT | 1393061..1394152 (+) | 1092 | WP_037540763.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36979.86 Da Isoelectric Point: 8.2830
>NTDB_id=474241 H6Y62_RS06680 WP_037555185.1 1388752..1389726(+) (comGA) [Staphylococcus lugdunensis strain MBAZ2]
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVYYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRNASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVYYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRNASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=474241 H6Y62_RS06680 WP_037555185.1 1388752..1389726(+) (comGA) [Staphylococcus lugdunensis strain MBAZ2]
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTATATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAATTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAAATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTATATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAATTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAAATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.898 |
99.691 |
0.707 |
| comGA | Staphylococcus aureus N315 |
70.898 |
99.691 |
0.707 |