Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H6Y62_RS04340 Genome accession   NZ_CP060160
Coordinates   942251..942652 (+) Length   133 a.a.
NCBI ID   WP_002461219.1    Uniprot ID   A0A853V538
Organism   Staphylococcus lugdunensis strain MBAZ2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 935242..943838 942251..942652 within 0


Gene organization within MGE regions


Location: 935242..943838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6Y62_RS04305 (H6Y62_04305) fabZ 935242..935682 (+) 441 WP_002461222.1 3-hydroxyacyl-ACP dehydratase FabZ -
  H6Y62_RS04310 (H6Y62_04310) tnpA 935974..936456 (+) 483 WP_062248903.1 IS200/IS605 family transposase -
  H6Y62_RS04315 (H6Y62_04315) - 936581..937555 (-) 975 WP_037540684.1 helix-turn-helix domain-containing protein -
  H6Y62_RS04320 (H6Y62_04320) - 937705..939459 (+) 1755 WP_037540683.1 ABC transporter ATP-binding protein -
  H6Y62_RS04325 (H6Y62_04325) - 939443..941163 (+) 1721 Protein_859 ABC transporter ATP-binding protein -
  H6Y62_RS04330 (H6Y62_04330) - 941162..941269 (+) 108 Protein_860 IS200/IS605 family transposase -
  H6Y62_RS04335 (H6Y62_04335) - 941609..942061 (-) 453 WP_002461221.1 YwpF-like family protein -
  H6Y62_RS04340 (H6Y62_04340) ssb 942251..942652 (+) 402 WP_002461219.1 single-stranded DNA-binding protein Machinery gene
  H6Y62_RS04345 (H6Y62_04345) - 943131..943838 (+) 708 WP_002492081.1 transglycosylase family protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15388.56 Da        Isoelectric Point: 6.7151

>NTDB_id=474229 H6Y62_RS04340 WP_002461219.1 942251..942652(+) (ssb) [Staphylococcus lugdunensis strain MBAZ2]
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE

Nucleotide


Download         Length: 402 bp        

>NTDB_id=474229 H6Y62_RS04340 WP_002461219.1 942251..942652(+) (ssb) [Staphylococcus lugdunensis strain MBAZ2]
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACTAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853V538

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

69.697

99.248

0.692
  ssb Staphylococcus aureus MW2

68.939

99.248

0.684