Detailed information NTG0474147

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: JRY11_RS05490
• Genome accession: NZ_CP070382
• Coordinates: 1024259..1025335 (-)
• Length: 358 a.a.
• NCBI ID: WP_023188655.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain KF140
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1019259..1030335

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JRY11_RS05460 (JRY11_001099)	-	1020596..1020811 (-)	216	WP_248554416.1	hypothetical protein	-
JRY11_RS05465 (JRY11_001101)	-	1021057..1021359 (-)	303	WP_232238875.1	hypothetical protein	-
JRY11_RS05470 (JRY11_001102)	-	1021528..1022028 (-)	501	WP_248554417.1	hypothetical protein	-
JRY11_RS05475 (JRY11_001103)	-	1022414..1023337 (+)	924	WP_023188653.1	alpha/beta hydrolase	-
JRY11_RS05480 (JRY11_001104)	-	1023349..1023726 (-)	378	WP_012898494.1	MerR family transcriptional regulator	-
JRY11_RS05485 (JRY11_001105)	-	1023804..1024172 (+)	369	WP_023188654.1	carboxymuconolactone decarboxylase family protein	-
JRY11_RS05490 (JRY11_001106)	recF	1024259..1025335 (-)	1077	WP_023188655.1	DNA replication/repair protein RecF	Machinery gene
JRY11_RS05495 (JRY11_001107)	yaaA	1025335..1025697 (-)	363	WP_012898492.1	S4 domain-containing protein YaaA	-
JRY11_RS05500 (JRY11_001108)	-	1025895..1027181 (+)	1287	WP_248554418.1	pitrilysin family protein	-
JRY11_RS05505 (JRY11_001109)	-	1027171..1028454 (+)	1284	WP_023188656.1	pitrilysin family protein	-
JRY11_RS05510 (JRY11_001110)	-	1028718..1029614 (+)	897	WP_248554419.1	RodZ family helix-turn-helix domain-containing protein	-
JRY11_RS05515 (JRY11_001111)	pgsA	1029655..1030227 (+)	573	WP_012898490.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41356.23 Da
• Isoelectric Point: 6.8652

>NTDB_id=474147 JRY11_RS05490 WP_023188655.1 1024259..1025335(-) (recF) [Lactococcus lactis strain KF140]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
IPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFVDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=474147 JRY11_RS05490 WP_023188655.1 1024259..1025335(-) (recF) [Lactococcus lactis strain KF140]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCATCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CCAGTCACGATAAAGAGCTCATTTCTTGGTCGCAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
ATTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTGGTCAAAGGTTCTCCTGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTATTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTGTTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	46.264	97.207	0.45