Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   JRY11_RS02875 Genome accession   NZ_CP070382
Coordinates   557405..558190 (+) Length   261 a.a.
NCBI ID   WP_023189497.1    Uniprot ID   -
Organism   Lactococcus lactis strain KF140     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 552405..563190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS02845 (JRY11_000575) - 552415..552903 (-) 489 WP_010905115.1 YdeI/OmpD-associated family protein -
  JRY11_RS02850 (JRY11_000576) - 552941..553225 (-) 285 WP_010905114.1 hypothetical protein -
  JRY11_RS02855 (JRY11_000577) - 553356..554909 (-) 1554 WP_038598438.1 ABC-F family ATP-binding cassette domain-containing protein -
  JRY11_RS02860 (JRY11_000578) - 554939..555406 (-) 468 WP_010905112.1 DUF3013 family protein -
  JRY11_RS02865 (JRY11_000579) - 555558..556046 (+) 489 WP_057719829.1 GNAT family N-acetyltransferase -
  JRY11_RS02870 (JRY11_000580) rarA 556090..557349 (+) 1260 WP_057719830.1 replication-associated recombination protein A Machinery gene
  JRY11_RS02875 (JRY11_000581) spo0J 557405..558190 (+) 786 WP_023189497.1 ParB/RepB/Spo0J family partition protein Regulator
  JRY11_RS02880 (JRY11_000582) - 558243..560024 (-) 1782 WP_057719831.1 heavy metal translocating P-type ATPase -
  JRY11_RS02885 (JRY11_000583) rpmF 560388..560561 (+) 174 WP_010905107.1 50S ribosomal protein L32 -
  JRY11_RS02890 (JRY11_000584) rpmG 560591..560740 (+) 150 WP_003132258.1 50S ribosomal protein L33 -
  JRY11_RS02895 (JRY11_000585) - 560820..561410 (-) 591 WP_003132255.1 flavin reductase family protein -
  JRY11_RS02900 (JRY11_000586) - 561421..562590 (-) 1170 WP_057719864.1 ring-cleaving dioxygenase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29741.60 Da        Isoelectric Point: 9.5731

>NTDB_id=474119 JRY11_RS02875 WP_023189497.1 557405..558190(+) (spo0J) [Lactococcus lactis strain KF140]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENRDISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=474119 JRY11_RS02875 WP_023189497.1 557405..558190(+) (spo0J) [Lactococcus lactis strain KF140]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGATATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCATTTTGATAATCTTGATGAACTGGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471