Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JRY11_RS02870 Genome accession   NZ_CP070382
Coordinates   556090..557349 (+) Length   419 a.a.
NCBI ID   WP_057719830.1    Uniprot ID   -
Organism   Lactococcus lactis strain KF140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 551090..562349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS02840 (JRY11_000574) prmA 551444..552397 (-) 954 WP_015425637.1 50S ribosomal protein L11 methyltransferase -
  JRY11_RS02845 (JRY11_000575) - 552415..552903 (-) 489 WP_010905115.1 YdeI/OmpD-associated family protein -
  JRY11_RS02850 (JRY11_000576) - 552941..553225 (-) 285 WP_010905114.1 hypothetical protein -
  JRY11_RS02855 (JRY11_000577) - 553356..554909 (-) 1554 WP_038598438.1 ABC-F family ATP-binding cassette domain-containing protein -
  JRY11_RS02860 (JRY11_000578) - 554939..555406 (-) 468 WP_010905112.1 DUF3013 family protein -
  JRY11_RS02865 (JRY11_000579) - 555558..556046 (+) 489 WP_057719829.1 GNAT family N-acetyltransferase -
  JRY11_RS02870 (JRY11_000580) rarA 556090..557349 (+) 1260 WP_057719830.1 replication-associated recombination protein A Machinery gene
  JRY11_RS02875 (JRY11_000581) spo0J 557405..558190 (+) 786 WP_023189497.1 ParB/RepB/Spo0J family partition protein Regulator
  JRY11_RS02880 (JRY11_000582) - 558243..560024 (-) 1782 WP_057719831.1 heavy metal translocating P-type ATPase -
  JRY11_RS02885 (JRY11_000583) rpmF 560388..560561 (+) 174 WP_010905107.1 50S ribosomal protein L32 -
  JRY11_RS02890 (JRY11_000584) rpmG 560591..560740 (+) 150 WP_003132258.1 50S ribosomal protein L33 -
  JRY11_RS02895 (JRY11_000585) - 560820..561410 (-) 591 WP_003132255.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46836.18 Da        Isoelectric Point: 5.7600

>NTDB_id=474118 JRY11_RS02870 WP_057719830.1 556090..557349(+) (rarA) [Lactococcus lactis strain KF140]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKEGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVTALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRN

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=474118 JRY11_RS02870 WP_057719830.1 556090..557349(+) (rarA) [Lactococcus lactis strain KF140]
ATGGCACAAAATCTTGCAAGACGAATGAGACCACGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCAATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATAGCCTCAGAAGCCGAATTTTCTGGTCAGCTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAACGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAGAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGACGATGATGCACTTTACTTTTTAATTCATTC
AACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACACCATGTCACTTTAG
ATGATATGGAAAATTCTTTACAAAGAAAAGCTGCAACTTTTGATAAAGAGGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
GAGTCTAGCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTA
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAACGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAAGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTTCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(247-411)

AAA C-terminal domain (AAA_assoc_2)

(173-246)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.102

100

0.597