Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   JRY11_RS01345 Genome accession   NZ_CP070382
Coordinates   249562..250374 (+) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis strain KF140     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 244562..255374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS01320 (JRY11_000266) yaaT 244617..245399 (-) 783 WP_023188991.1 stage 0 sporulation family protein Regulator
  JRY11_RS01325 (JRY11_000267) - 245451..246311 (-) 861 WP_012897231.1 DNA polymerase III subunit delta' -
  JRY11_RS01330 (JRY11_000268) tmk 246444..247079 (-) 636 WP_012897230.1 dTMP kinase -
  JRY11_RS01335 (JRY11_000269) yycF 247257..247958 (+) 702 WP_003131580.1 response regulator YycF -
  JRY11_RS01340 (JRY11_000270) vicK 247951..249393 (+) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK Regulator
  JRY11_RS01345 (JRY11_000271) vicX 249562..250374 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  JRY11_RS01350 (JRY11_000272) groL 250420..252048 (-) 1629 WP_023188993.1 chaperonin GroEL -
  JRY11_RS01355 (JRY11_000273) groES 252137..252421 (-) 285 WP_003131589.1 co-chaperone GroES -
  JRY11_RS01360 (JRY11_000274) - 252541..252930 (-) 390 WP_023188994.1 single-stranded DNA-binding protein -
  JRY11_RS01365 (JRY11_000275) - 253020..254360 (-) 1341 WP_023188995.1 FAD-dependent oxidoreductase -
  JRY11_RS01370 (JRY11_000276) ytpR 254522..255148 (-) 627 WP_003131594.1 YtpR family tRNA-binding protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=474109 JRY11_RS01345 WP_003131583.1 249562..250374(+) (vicX) [Lactococcus lactis strain KF140]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=474109 JRY11_RS01345 WP_003131583.1 249562..250374(+) (vicX) [Lactococcus lactis strain KF140]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685