Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GWQ54_RS24870 Genome accession   NZ_CP070373
Coordinates   5646268..5646897 (+) Length   209 a.a.
NCBI ID   WP_167155359.1    Uniprot ID   -
Organism   Streptomyces sp. MBT27     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5641268..5651897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWQ54_RS24840 - 5641530..5642204 (-) 675 WP_167155371.1 urease accessory UreF family protein -
  GWQ54_RS24845 - 5642219..5643940 (-) 1722 WP_167155368.1 urease subunit alpha -
  GWQ54_RS24850 - 5643933..5644244 (-) 312 WP_161247377.1 urease subunit beta -
  GWQ54_RS24855 - 5644258..5644560 (-) 303 WP_161247375.1 urease subunit gamma -
  GWQ54_RS24860 - 5644883..5645164 (-) 282 WP_167155365.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  GWQ54_RS24865 - 5645314..5646006 (-) 693 WP_167155362.1 lysophospholipid acyltransferase family protein -
  GWQ54_RS24870 clpP 5646268..5646897 (+) 630 WP_167155359.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GWQ54_RS24875 - 5646904..5647212 (+) 309 WP_161247367.1 hypothetical protein -
  GWQ54_RS24880 - 5647727..5648200 (+) 474 WP_161247365.1 C40 family peptidase -
  GWQ54_RS24885 - 5648357..5648791 (-) 435 WP_161251084.1 ATP-binding protein -
  GWQ54_RS24890 - 5649026..5649889 (+) 864 WP_167155356.1 helix-turn-helix transcriptional regulator -
  GWQ54_RS24895 - 5649913..5650134 (+) 222 WP_161251088.1 DUF397 domain-containing protein -
  GWQ54_RS24900 - 5650142..5651284 (-) 1143 WP_167155353.1 8-amino-7-oxononanoate synthase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22876.98 Da        Isoelectric Point: 5.8753

>NTDB_id=474072 GWQ54_RS24870 WP_167155359.1 5646268..5646897(+) (clpP) [Streptomyces sp. MBT27]
MNHRPAARHVLPQFEERTATGIRTLDPYSKLFEERIVFLGTPVDDASANDVMAQFMHLEHADPDRDISLYINSPGGSLTA
MTAIHDTMRFVTCDVQTFCLGQVSSVAAVLLAAGTPGKRAVQPASRVLLQQPSIEEPMRGQPSDLEIHAAEILRGRALLT
ELLARYTGKDAERVAADIDRDLVFDAEGAVAYGLADHVLQSRKTSLRGR

Nucleotide


Download         Length: 630 bp        

>NTDB_id=474072 GWQ54_RS24870 WP_167155359.1 5646268..5646897(+) (clpP) [Streptomyces sp. MBT27]
ATGAACCACCGCCCTGCCGCCCGCCATGTGCTCCCCCAGTTCGAGGAGCGCACCGCCACCGGCATCCGCACGCTCGATCC
GTACTCCAAGCTCTTCGAGGAGCGGATCGTCTTTCTCGGCACCCCGGTCGACGACGCGTCCGCCAACGACGTGATGGCCC
AGTTCATGCACCTGGAACACGCGGACCCGGACCGGGACATCTCGCTGTACATCAACTCCCCCGGCGGCTCGCTCACCGCG
ATGACCGCGATCCACGACACGATGCGGTTCGTCACGTGTGACGTGCAGACGTTCTGCCTGGGCCAGGTGAGCTCGGTGGC
CGCGGTGCTGCTCGCGGCCGGCACCCCCGGCAAGCGCGCCGTGCAGCCCGCCTCCCGGGTGCTTCTGCAACAGCCGTCCA
TCGAGGAGCCGATGCGGGGCCAGCCCTCCGACCTGGAGATCCACGCGGCCGAAATCCTGCGCGGGCGGGCCCTGTTGACC
GAGCTGCTCGCGCGCTACACCGGCAAGGACGCGGAGCGGGTGGCCGCCGACATCGACCGGGACCTGGTCTTCGACGCCGA
GGGTGCCGTGGCGTACGGGCTCGCCGATCATGTGCTCCAGAGCCGCAAGACGTCCCTGCGCGGCAGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(23-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

44.503

91.388

0.407
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

42.105

90.909

0.383