Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   I653_RS00325 Genome accession   NC_020832
Coordinates   60066..60296 (+) Length   76 a.a.
NCBI ID   WP_015482693.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. BAB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55066..65296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I653_RS00295 (I653_00240) ridA 55229..55606 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  I653_RS00300 (I653_00245) spoVG 55801..56094 (+) 294 WP_003218346.1 septation regulator SpoVG -
  I653_RS00305 (I653_00250) glmU 56287..57657 (+) 1371 WP_015482692.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  I653_RS00310 (I653_00255) prsS 57680..58633 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  I653_RS00315 (I653_00260) rplYB 58719..59333 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  I653_RS00320 (I653_00265) pth 59440..60006 (+) 567 WP_015382565.1 aminoacyl-tRNA hydrolase -
  I653_RS00325 (I653_00270) subA/fin 60066..60296 (+) 231 WP_015482693.1 anti-sigma-F factor Fin Machinery gene
  I653_RS00330 (I653_00275) mfd 60366..63899 (+) 3534 WP_014478601.1 transcription-repair coupling factor -
  I653_RS00335 (I653_00280) spoVT 64035..64571 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8798.74 Da        Isoelectric Point: 5.3895

>NTDB_id=47405 I653_RS00325 WP_015482693.1 60066..60296(+) (subA/fin) [Bacillus subtilis subsp. subtilis str. BAB-1]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHENHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=47405 I653_RS00325 WP_015482693.1 60066..60296(+) (subA/fin) [Bacillus subtilis subsp. subtilis str. BAB-1]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAAAATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

98.684

100

0.987

Multiple sequence alignment