Detailed information NTG0473936

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: H5647_RS19010
• Genome accession: NZ_CP060092
• Coordinates: 4271031..4272404 (+)
• Length: 457 a.a.
• NCBI ID: WP_045860607.1
• Uniprot ID: -
• Organism: Teredinibacter purpureus strain Bs12
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4266031..4277404

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H5647_RS18995	-	4266647..4267567 (+)	921	WP_045861554.1	outer membrane protein assembly factor BamD	-
H5647_RS19000	-	4267642..4269270 (-)	1629	WP_045861555.1	NAD+ synthase	-
H5647_RS19005	-	4269418..4271031 (+)	1614	WP_236074972.1	PAS domain-containing sensor histidine kinase	-
H5647_RS19010	pilR	4271031..4272404 (+)	1374	WP_045860607.1	sigma-54 dependent transcriptional regulator	Regulator
H5647_RS19015	-	4272600..4273139 (+)	540	WP_045860608.1	GspH/FimT family pseudopilin	-
H5647_RS19020	-	4273216..4273683 (-)	468	WP_052692211.1	type IV pilin protein	-
H5647_RS19025	-	4273696..4277295 (-)	3600	WP_045860609.1	pilus assembly protein	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 50685.73 Da
• Isoelectric Point: 5.6830

>NTDB_id=473936 H5647_RS19010 WP_045860607.1 4271031..4272404(+) (pilR) [Teredinibacter purpureus strain Bs12]
MTSTKRALIIDDEPDIRELLEITLSRMALDVDSAADISEAKQQLNNNEYQICLTDMKLPDGNGIDLVRHVQKHFANLPIA
VITAHGNMDTAIEAMKAGAFDFVNKPIDLPSLRKLVNAALTSDRLPAISESSSKIIGNSTQIIKLKKSIQKLARSQAPIY
ISGESGSGKELVARSIHELGPRNSAPFIGVNCGAIPKELVESEFFGHKKGSFTGAGHDKQGLFQAAEGGTLFLDEVADLP
LDMQVKLLRAIQEKAVRSIGASEEISTNVRILCATHKNLESLVSSGDFRQDLFYRLNVIQLDVPSLRDRKEDIPALIDAL
LIRIATNCQLDKPTIEPAAQQKLSQYRYPGNIRELENILERAFTLCDDDTITEIDLQLDRNAATPAHRDPTKQTGHFQAC
QNHASIDDYLAEVEREILCETLEQTRWNKTMAAKKLGVSFRSLRYRLAKLGLDYNED

Nucleotide

• Length: 1374 bp

>NTDB_id=473936 H5647_RS19010 WP_045860607.1 4271031..4272404(+) (pilR) [Teredinibacter purpureus strain Bs12]
ATGACCTCGACAAAACGCGCCCTAATTATTGACGATGAGCCAGACATTCGCGAACTACTGGAAATTACCTTATCCCGTAT
GGCGTTAGACGTAGATTCTGCGGCAGATATATCAGAAGCAAAACAGCAACTCAATAACAATGAATATCAAATTTGTCTAA
CCGATATGAAATTACCGGATGGCAACGGTATAGACCTTGTTAGGCACGTACAAAAACATTTCGCAAACCTTCCAATTGCC
GTCATTACTGCGCACGGCAATATGGATACAGCCATAGAAGCGATGAAGGCCGGTGCTTTCGACTTTGTCAATAAACCTAT
CGATTTGCCCTCGCTACGAAAACTTGTCAACGCAGCACTGACGTCCGACCGGTTGCCTGCTATCAGTGAAAGCAGCTCAA
AAATTATTGGTAATTCCACACAAATAATTAAACTAAAAAAATCCATTCAAAAACTCGCCCGCTCTCAAGCGCCCATATAT
ATTAGCGGTGAATCTGGAAGCGGAAAAGAACTCGTCGCTCGCTCGATACACGAATTAGGCCCACGTAATAGCGCCCCATT
TATTGGCGTCAACTGCGGTGCTATCCCTAAAGAGCTGGTAGAAAGTGAATTCTTTGGCCACAAAAAAGGCTCTTTTACCG
GTGCAGGACACGACAAGCAAGGTCTCTTTCAAGCCGCTGAAGGCGGCACACTATTCCTTGATGAGGTTGCCGATCTTCCG
CTGGACATGCAAGTAAAGCTTTTACGGGCGATTCAGGAAAAAGCCGTTCGTTCTATCGGTGCATCGGAGGAAATCTCTAC
GAATGTTCGCATTCTTTGCGCAACACACAAAAATCTTGAATCACTCGTTAGCAGCGGTGATTTTAGACAAGATCTTTTCT
ACCGATTAAATGTCATTCAACTCGATGTGCCAAGCTTACGCGATAGAAAAGAAGATATTCCCGCACTCATTGATGCGTTA
CTCATCCGTATTGCAACCAATTGCCAACTAGACAAACCAACAATTGAACCCGCCGCTCAACAGAAGCTCTCTCAATACCG
CTACCCTGGAAATATTCGAGAGCTGGAGAATATTCTTGAACGAGCATTTACGCTGTGTGACGACGATACGATTACAGAAA
TAGATTTACAGCTAGATCGCAATGCCGCTACACCAGCCCATAGAGACCCAACCAAACAAACCGGACATTTCCAGGCCTGC
CAAAACCACGCTTCTATCGATGATTATTTGGCCGAAGTCGAGCGTGAAATACTGTGTGAAACACTGGAGCAAACTCGCTG
GAATAAAACCATGGCGGCAAAAAAACTCGGTGTTAGCTTTCGATCACTGCGTTATCGCTTGGCAAAACTGGGGCTAGATT
ACAATGAAGACTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-116)

• Sigma-54 interaction domain (Sigma54_activat) (135-301)

• Bacterial regulatory protein, Fis family (HTH_8) (410-450)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.72	99.125	0.582
pilR	Acinetobacter baumannii strain A118	47.495	100	0.477