Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   H5404_RS21100 Genome accession   NZ_CP060088
Coordinates   2844892..2845506 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJA114     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2839892..2850506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5404_RS21080 (H5404_21080) - 2840178..2841095 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  H5404_RS21085 (H5404_21085) - 2841347..2843017 (-) 1671 WP_021450011.1 SulP family inorganic anion transporter -
  H5404_RS21090 (H5404_21090) can 2843301..2843969 (+) 669 WP_005462578.1 carbonate dehydratase -
  H5404_RS21095 (H5404_21095) hpt 2844043..2844573 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  H5404_RS21100 (H5404_21100) opaR 2844892..2845506 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  H5404_RS21105 (H5404_21105) lpdA 2845634..2847061 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  H5404_RS21110 (H5404_21110) aceF 2847330..2849216 (-) 1887 WP_021453621.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=473893 H5404_RS21100 WP_005479697.1 2844892..2845506(+) (opaR) [Vibrio parahaemolyticus strain TJA114]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=473893 H5404_RS21100 WP_005479697.1 2844892..2845506(+) (opaR) [Vibrio parahaemolyticus strain TJA114]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGCCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
GGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701