Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   JWB57_RS06160 Genome accession   NZ_CP070358
Coordinates   1243112..1244605 (-) Length   497 a.a.
NCBI ID   WP_000089272.1    Uniprot ID   A0A0D5YHU4
Organism   Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1238112..1249605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWB57_RS06135 (JWB57_08300) - 1239205..1239849 (-) 645 WP_001139838.1 hypothetical protein -
  JWB57_RS06140 (JWB57_08305) ispF 1239953..1240435 (+) 483 WP_000226512.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JWB57_RS06145 (JWB57_08310) - 1240432..1240956 (-) 525 WP_000209136.1 protein tyrosine phosphatase family protein -
  JWB57_RS06150 (JWB57_08315) argF 1241150..1242070 (-) 921 WP_001207985.1 ornithine carbamoyltransferase -
  JWB57_RS06155 (JWB57_08320) adeN 1242183..1242836 (-) 654 WP_000543879.1 multidrug efflux transcriptional repressor AdeN -
  JWB57_RS06160 (JWB57_08325) luxO 1243112..1244605 (-) 1494 WP_000089272.1 nitrogen regulation protein NR(I) Regulator
  JWB57_RS06165 (JWB57_08330) glnL 1244592..1245701 (-) 1110 WP_000371970.1 nitrogen regulation protein NR(II) -
  JWB57_RS06175 (JWB57_08340) rimO 1246043..1247386 (+) 1344 WP_000856681.1 30S ribosomal protein S12 methylthiotransferase RimO -
  JWB57_RS06180 (JWB57_08345) pyrH 1247438..1248166 (+) 729 WP_000852257.1 UMP kinase -
  JWB57_RS06185 (JWB57_08350) frr 1248252..1248806 (+) 555 WP_000606428.1 ribosome recycling factor -
  JWB57_RS06190 (JWB57_08355) uppS 1248812..1249564 (+) 753 WP_000132222.1 polyprenyl diphosphate synthase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 56195.00 Da        Isoelectric Point: 6.3941

>NTDB_id=473871 JWB57_RS06160 WP_000089272.1 1243112..1244605(-) (luxO) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
MSRNKIWVIDDDRAMRWVLEKTFKEEGFDVTNFEEAQTALERLHHDAPDVILTDIRMPGIDGLTFLSKVKNSHPDLPVII
MTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAILHINKLQQQEATKTASPLQSTEIIGESPAMQEVFRAIGRLS
QSHITVLINGESGTGKELVAHALHKHSPRRAKPFIALNMAAIPKDLIETELFGHEKGAFTGANTQHQGRFEQANGGTLFL
DEIGDMPFETQTRLLRVLADGEFYRVGGHIPVKVDVRIVAATHQDLEKLVNEGRFREDLYHRLNVIRIHIPKLAHRSEDI
PMLAQHFLARAGKELGVSPKILRTETTDYMQQLPWPGNVRQLENTCRRLTVMITGREVYPEDLPSELKQVPLQKSSETSQ
PAPSFERISLHHWDELLSQWAIQKLKNGEMKILDIATPMFERTLINAALQQTRGRKRHAAELLGWGRNTLTRKLKELGMD
SADDDDEDEHKATLSEA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=473871 JWB57_RS06160 WP_000089272.1 1243112..1244605(-) (luxO) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
GTGTCGCGAAATAAAATATGGGTTATTGATGACGATCGCGCCATGCGATGGGTACTTGAAAAGACCTTTAAAGAAGAAGG
ATTTGACGTCACCAATTTTGAAGAAGCTCAAACAGCACTTGAACGTTTACATCATGATGCGCCCGATGTCATCTTAACTG
ACATTCGTATGCCAGGTATTGATGGGTTAACTTTCTTATCTAAAGTGAAAAACTCTCACCCCGACTTGCCTGTTATCATT
ATGACAGCGCATTCGGACTTAGAGTCTGCTGTATCAAGCTATCAGACTGGTGCATTTGAGTATTTACCAAAACCATTCGA
TATTGATGAAGCTTTAGCTCTAGTCAATCGAGCGATTTTGCATATCAATAAATTGCAGCAGCAAGAAGCGACAAAAACAG
CTTCACCACTACAATCAACAGAAATTATTGGCGAATCTCCTGCTATGCAAGAGGTTTTCCGAGCGATTGGTCGTTTATCT
CAGTCGCATATTACCGTTTTAATTAATGGTGAATCAGGCACAGGTAAAGAACTGGTTGCGCATGCTTTACATAAACATTC
TCCACGACGCGCTAAGCCTTTTATTGCTTTAAACATGGCAGCAATTCCTAAAGATTTAATCGAAACGGAATTATTTGGTC
ATGAAAAAGGTGCTTTCACGGGTGCAAACACCCAACATCAAGGCCGCTTTGAACAAGCAAATGGTGGAACTCTCTTCCTT
GATGAAATTGGTGACATGCCATTTGAAACCCAGACTCGATTGTTACGTGTGCTCGCAGATGGTGAGTTTTACCGAGTTGG
TGGTCATATACCGGTTAAAGTAGATGTCAGAATTGTCGCGGCAACCCATCAAGACTTAGAAAAACTGGTAAATGAAGGTC
GTTTCCGTGAAGACTTATACCACCGTCTAAATGTTATTCGAATTCATATTCCGAAGCTTGCTCATCGCAGTGAAGACATC
CCGATGCTGGCTCAACATTTCTTGGCTCGCGCGGGTAAAGAGCTAGGTGTAAGTCCAAAGATTTTACGCACTGAAACAAC
GGACTATATGCAACAATTACCATGGCCGGGTAATGTTCGTCAGCTTGAGAATACCTGCCGTCGGTTAACCGTCATGATTA
CTGGTCGTGAGGTTTATCCGGAAGATTTACCTTCTGAGCTTAAACAGGTTCCACTCCAAAAAAGTAGTGAGACTAGTCAA
CCAGCACCATCTTTTGAACGTATTTCTTTGCACCATTGGGATGAGCTACTAAGCCAATGGGCAATTCAAAAACTTAAAAA
TGGTGAAATGAAGATTTTAGACATTGCTACTCCAATGTTTGAGCGCACCTTAATTAATGCAGCACTACAGCAAACTCGTG
GGCGCAAACGTCATGCAGCCGAGCTGTTAGGTTGGGGTCGTAACACCCTAACCAGAAAGTTAAAAGAGCTAGGCATGGAT
TCTGCTGATGACGATGATGAGGACGAACATAAAGCAACATTGTCAGAAGCTTAA

Domains

Predicted by InterProScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-309)

Bacterial regulatory protein, Fis family (HTH_8)

(439-477)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YHU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

40.222

90.543

0.364
  pilR Pseudomonas aeruginosa PAK

37.5

96.579

0.362