Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   H5405_RS02340 Genome accession   NZ_CP060085
Coordinates   458930..459271 (+) Length   113 a.a.
NCBI ID   WP_007614303.1    Uniprot ID   A0AAP5QM53
Organism   Bacillus velezensis strain HAB-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 453930..464271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS02305 (H5405_02305) - 454052..454849 (+) 798 WP_007614310.1 flagellar hook-basal body protein -
  H5405_RS02310 (H5405_02310) - 454874..455695 (+) 822 WP_029325724.1 flagellar hook-basal body protein -
  H5405_RS02315 (H5405_02315) - 455713..456777 (-) 1065 WP_029325723.1 tetratricopeptide repeat protein -
  H5405_RS02320 (H5405_02320) fabZ 456973..457398 (+) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  H5405_RS02325 (H5405_02325) mscL 457455..457850 (+) 396 WP_003151243.1 large conductance mechanosensitive channel protein MscL -
  H5405_RS02330 (H5405_02330) - 457896..458306 (-) 411 WP_007614305.1 YwpF-like family protein -
  H5405_RS02335 (H5405_02335) - 458479..458832 (+) 354 WP_003151247.1 hypothetical protein -
  H5405_RS02340 (H5405_02340) ssbB 458930..459271 (+) 342 WP_007614303.1 single-stranded DNA-binding protein Machinery gene
  H5405_RS02345 (H5405_02345) - 459480..460262 (+) 783 WP_007614297.1 DeoR/GlpR family DNA-binding transcription regulator -
  H5405_RS02350 (H5405_02350) - 460259..461116 (+) 858 WP_007614285.1 Cof-type HAD-IIB family hydrolase -
  H5405_RS02355 (H5405_02355) - 461229..464003 (-) 2775 WP_007614280.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12633.47 Da        Isoelectric Point: 9.0994

>NTDB_id=473770 H5405_RS02340 WP_007614303.1 458930..459271(+) (ssbB) [Bacillus velezensis strain HAB-2]
MFNHVMLVGRLTKDPELRFTSAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKQKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=473770 H5405_RS02340 WP_007614303.1 458930..459271(+) (ssbB) [Bacillus velezensis strain HAB-2]
TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCTCCGTTTTACATCAGCGGGCATTCCCGTCGC
GCATATTACGTTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCGTCAACTGCACCATCT
GGAGAAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTGAGCGGCAGAATCCAGACGAGA
AGTTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAGCA
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.991

100

0.77
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

93.805

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

93.805

0.496
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.903

100

0.469
  ssbA Streptococcus mutans UA159

42.478

100

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae D39

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae R6

40.708

100

0.407
  ssbB/cilA Streptococcus mitis SK321

40.708

100

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

37.5

99.115

0.372