Detailed information NTG0473753

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: H5715_RS10330
• Genome accession: NZ_CP060084
• Coordinates: 2636989..2638359 (+)
• Length: 456 a.a.
• NCBI ID: WP_075186687.1
• Uniprot ID: -
• Organism: Teredinibacter haidensis strain Bs08
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2631989..2643359

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H5715_RS10315	-	2632669..2633580 (+)	912	WP_075186684.1	outer membrane protein assembly factor BamD	-
H5715_RS10320	-	2633611..2635239 (-)	1629	WP_075186685.1	NAD+ synthase	-
H5715_RS10325	-	2635376..2636986 (+)	1611	WP_075186686.1	ATP-binding protein	-
H5715_RS10330	pilR	2636989..2638359 (+)	1371	WP_075186687.1	sigma-54 dependent transcriptional regulator	Regulator
H5715_RS10335	-	2638505..2639056 (+)	552	WP_075186688.1	GspH/FimT family pseudopilin	-
H5715_RS10340	-	2639063..2639530 (-)	468	WP_075186689.1	type IV pilin protein	-
H5715_RS10345	-	2639584..2643147 (-)	3564	WP_075186690.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 50408.51 Da
• Isoelectric Point: 5.1616

>NTDB_id=473753 H5715_RS10330 WP_075186687.1 2636989..2638359(+) (pilR) [Teredinibacter haidensis strain Bs08]
MPSMRALVIDDEPDIRELLEITLSRMSLDVDAAANIAEAKQYLETCEYNICLTDMKLPDGNGIDLVRHVQKHFPSLPIAV
ITAHGNMDTAIEAMKAGAFDFVSKPIDLPSLRKLVDTAITTGQLPNTSESSIKIIGDSPQIEKLKKAIQKLARSQAPIYI
SGESGSGKELVARSIHELGPRNSSPFIAVNCGAIPKELMESEFFGHKKGSFTGASQDKQGLFQAAEGGTLFLDEVADLPL
EMQVKLLRAIQEKAVRPIGAPSEIATNVRILCATHKNLEQLVNDGNFRQDLFYRLNVIQLNVPALRDRKEDIPQLIGALL
TRIAHNCELEKPGIDSAAQKKLIEYSYPGNIRELENILERAFTLCDDDVIQESDLQLNRSASPPAPRDNGKQSSHFNASI
NHASIDDYLAEVEREIICETLEQTRWNKTLAAKKLGISFRSLRYRLAKLGLDDSDD

Nucleotide

• Length: 1371 bp

>NTDB_id=473753 H5715_RS10330 WP_075186687.1 2636989..2638359(+) (pilR) [Teredinibacter haidensis strain Bs08]
ATGCCCAGCATGCGCGCCCTTGTCATTGACGATGAACCCGATATTCGTGAGTTGCTCGAAATCACACTGTCCCGAATGTC
GCTTGATGTCGATGCGGCTGCGAATATAGCTGAAGCGAAGCAGTATCTGGAAACCTGTGAATACAATATTTGCCTGACCG
ATATGAAGCTACCCGATGGCAATGGAATTGATTTAGTCCGGCATGTACAAAAACATTTTCCTTCTCTACCTATCGCCGTC
ATCACCGCCCACGGCAATATGGACACTGCTATCGAAGCCATGAAAGCTGGCGCTTTCGACTTTGTGAGTAAACCCATTGA
TTTACCATCTTTAAGAAAACTTGTAGATACCGCAATCACCACAGGCCAACTTCCAAATACCAGCGAAAGCAGTATTAAAA
TTATTGGCGATTCCCCTCAGATCGAAAAACTCAAAAAAGCTATCCAAAAACTGGCCCGCTCACAAGCCCCAATCTATATC
AGTGGGGAATCTGGTAGCGGAAAGGAACTGGTTGCTCGCTCTATTCACGAACTCGGGCCACGCAATAGCTCTCCATTTAT
CGCTGTAAACTGTGGAGCCATACCGAAAGAATTGATGGAAAGTGAATTTTTCGGGCATAAAAAGGGCTCTTTTACCGGCG
CTAGCCAGGACAAACAAGGCTTATTTCAGGCTGCGGAAGGAGGAACACTCTTTCTGGACGAAGTTGCAGATCTGCCACTG
GAGATGCAGGTAAAACTCTTAAGAGCAATACAAGAAAAGGCCGTTAGACCCATTGGTGCGCCCAGCGAAATAGCAACCAA
TGTCCGTATACTGTGTGCAACCCATAAAAACCTGGAACAACTGGTTAACGACGGCAATTTTCGCCAGGACTTATTCTATC
GGCTTAATGTTATTCAGTTAAACGTGCCGGCGCTCAGGGACAGAAAGGAAGATATTCCCCAGCTTATAGGCGCACTACTT
ACCCGCATTGCACATAATTGTGAGCTGGAAAAGCCGGGAATCGACAGTGCGGCACAGAAAAAACTGATCGAATACAGCTA
CCCAGGCAACATTCGCGAGCTTGAAAACATTCTGGAACGCGCCTTTACCCTCTGTGATGACGACGTAATACAGGAATCTG
ATTTACAACTGAATCGCAGCGCAAGTCCACCGGCCCCTCGCGATAACGGAAAACAGAGTTCGCACTTTAATGCCAGCATA
AACCACGCATCTATCGATGACTACCTGGCAGAAGTGGAGCGCGAAATCATTTGTGAAACTCTTGAACAGACACGATGGAA
TAAAACCCTGGCAGCTAAAAAACTGGGCATAAGCTTCCGCTCATTGCGCTACCGCCTGGCAAAGCTGGGGCTTGATGACA
GTGATGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (409-449)

• Sigma-54 interaction domain (Sigma54_activat) (134-300)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.031	99.561	0.588
pilR	Acinetobacter baumannii strain A118	48.584	100	0.489