Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JTC67_RS21105 Genome accession   NZ_CP070229
Coordinates   4187306..4188043 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EC12     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4182306..4193043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTC67_RS21080 (JTC67_20905) tyrA 4183021..4184142 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JTC67_RS21085 (JTC67_20910) pheA 4184185..4185345 (-) 1161 WP_024232092.1 bifunctional chorismate mutase/prephenate dehydratase -
  JTC67_RS21090 (JTC67_20915) pheL 4185444..4185491 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JTC67_RS21095 (JTC67_20920) raiA 4185595..4185936 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JTC67_RS21100 (JTC67_20925) - 4186194..4187185 (-) 992 Protein_4137 IS4 family transposase -
  JTC67_RS21105 (JTC67_20930) comL 4187306..4188043 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JTC67_RS21110 (JTC67_20935) rluD 4188178..4189158 (+) 981 WP_001592513.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JTC67_RS21115 (JTC67_20940) yfiH 4189155..4189886 (+) 732 WP_000040119.1 purine nucleoside phosphorylase YfiH -
  JTC67_RS21120 (JTC67_20945) clpC 4190016..4192589 (+) 2574 WP_001592512.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=473678 JTC67_RS21105 WP_000197686.1 4187306..4188043(-) (comL) [Escherichia coli strain EC12]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=473678 JTC67_RS21105 WP_000197686.1 4187306..4188043(-) (comL) [Escherichia coli strain EC12]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376