Detailed information NTG0047358

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: HMPREF9231_RS00750
• Genome accession: NC_017456
• Coordinates: 178324..179025 (-)
• Length: 233 a.a.
• NCBI ID: WP_004114219.1
• Uniprot ID: -
• Organism: Gardnerella vaginalis HMP9231
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 173324..184025

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HMPREF9231_RS00735 (HMPREF9231_0153)	-	173786..174763 (-)	978	WP_004138670.1	sugar-binding transcriptional regulator	-
HMPREF9231_RS00740 (HMPREF9231_0154)	-	175550..176590 (+)	1041	WP_014554315.1	FAD:protein FMN transferase	-
HMPREF9231_RS00745 (HMPREF9231_0156)	-	176908..178317 (-)	1410	WP_014554316.1	sensor histidine kinase	-
HMPREF9231_RS00750 (HMPREF9231_0157)	scnR	178324..179025 (-)	702	WP_004114219.1	response regulator transcription factor	Regulator
HMPREF9231_RS00755 (HMPREF9231_0158)	-	179165..179929 (+)	765	WP_004138603.1	ABC transporter ATP-binding protein	-
HMPREF9231_RS00760 (HMPREF9231_0159)	-	179926..180651 (+)	726	WP_004138748.1	ABC transporter permease	-
HMPREF9231_RS00765 (HMPREF9231_0160)	-	180665..181429 (+)	765	WP_004114222.1	ABC transporter permease	-
HMPREF9231_RS00770 (HMPREF9231_0162)	-	181862..183466 (+)	1605	WP_041160624.1	type I restriction-modification system subunit M	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26467.58 Da
• Isoelectric Point: 4.8946

>NTDB_id=47358 HMPREF9231_RS00750 WP_004114219.1 178324..179025(-) (scnR) [Gardnerella vaginalis HMP9231]
MNLNDYLLNKHLLLVDDEQELLDMVVSILNEYGFYNITTAKSIKDAVEATQKLRPELAILDVMLPDGNGFELMKQIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAEVIKNNEHIPLT
AKEHDLLSALYRNAGRIVTIDALCEAAWGDNPFGYENSLMAHIRRIREKIELNPSQPVSLVTVKGLGYKLIVE

Nucleotide

• Length: 702 bp

>NTDB_id=47358 HMPREF9231_RS00750 WP_004114219.1 178324..179025(-) (scnR) [Gardnerella vaginalis HMP9231]
ATGAATCTGAATGATTATTTATTGAACAAGCATCTGCTGCTTGTTGACGATGAGCAGGAACTTCTAGATATGGTTGTGTC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGTATAAAAGATGCCGTAGAAGCAACACAAAAATTAC
GTCCAGAATTAGCAATCCTTGATGTTATGCTCCCCGACGGTAATGGGTTTGAACTAATGAAGCAGATAAAACAATATAGT
GATTGTCCTATTTTATTCCTTACTGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGACGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCTTCTGCAGAAGTAATAAAAAATAACGAACATATTCCACTTACA
GCCAAAGAACACGATTTGCTTTCTGCTTTATATAGAAATGCGGGACGTATCGTAACAATTGACGCGTTATGTGAAGCTGC
ATGGGGTGATAATCCTTTTGGATATGAAAATTCTTTAATGGCGCATATACGTCGTATCAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCATTGGTAACAGTAAAAGGTTTAGGATACAAGCTGATTGTGGAGTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (13-120)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (155-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	52.466	95.708	0.502