Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   H6S61_RS06045 Genome accession   NZ_CP060047
Coordinates   1194792..1195409 (+) Length   205 a.a.
NCBI ID   WP_185891870.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2497-87     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1189792..1200409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS06025 (H6S61_06025) - 1190099..1191022 (-) 924 WP_017421202.1 ABC transporter ATP-binding protein -
  H6S61_RS06030 (H6S61_06030) - 1191191..1192861 (-) 1671 WP_026060804.1 SulP family inorganic anion transporter -
  H6S61_RS06035 (H6S61_06035) can 1193103..1193771 (+) 669 WP_026060803.1 carbonate dehydratase -
  H6S61_RS06040 (H6S61_06040) hpt 1193870..1194400 (-) 531 WP_011079559.1 hypoxanthine phosphoribosyltransferase -
  H6S61_RS06045 (H6S61_06045) opaR 1194792..1195409 (+) 618 WP_185891870.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  H6S61_RS06050 (H6S61_06050) lpdA 1195541..1196968 (-) 1428 WP_011079557.1 dihydrolipoyl dehydrogenase -
  H6S61_RS06055 (H6S61_06055) aceF 1197226..1199133 (-) 1908 WP_185891872.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23744.04 Da        Isoelectric Point: 6.1461

>NTDB_id=473531 H6S61_RS06045 WP_185891870.1 1194792..1195409(+) (opaR) [Vibrio vulnificus strain 2497-87]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHAKENIANITNAMIELVVQDNHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHNPE
DLANLFHGICYSLFVQANRTNNTAELNKLVSSYLDMLCIYKREHE

Nucleotide


Download         Length: 618 bp        

>NTDB_id=473531 H6S61_RS06045 WP_185891870.1 1194792..1195409(+) (opaR) [Vibrio vulnificus strain 2497-87]
ATGGACTCAATCGCAAAGAGACCGCGAACTCGCTTATCTCCGCTAAAACGTAAACAGCAGCTCATGGAAATTGCACTGGA
AGTGTTTGCTCGTCGTGGCATTGGCCGCGGTGGTCACGCAGACATCGCTGAAATTGCGCAAGTTTCTGTGGCGACCGTCT
TCAACTACTTCCCAACTCGCGAAGATCTTGTAGACGAAGTGCTTAATCATGTCGTTCGTCAGTTTTCTAATTTCCTATCT
GACAACATCGATTTGGATCTTCACGCTAAAGAAAACATCGCCAACATCACCAACGCAATGATTGAGCTTGTGGTGCAAGA
CAATCACTGGTTGAAAGTTTGGTTCGAGTGGAGTGCGTCAACGCGTGACGAAGTTTGGCCTCTGTTTGTCACCACCAACC
GTACTAATCAGTTGCTGGTACAAAACATGTTCATCAAAGCCATTGAACGCGGTGAAGTGTGTGATCAACACAACCCAGAA
GATTTGGCAAACCTGTTCCACGGCATTTGTTACTCGCTGTTTGTTCAAGCAAACCGCACCAACAATACTGCAGAGCTGAA
CAAACTGGTCAGCAGCTACTTAGACATGCTATGCATCTATAAACGCGAACACGAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.157

99.512

0.917
  hapR Vibrio cholerae C6706

72.864

97.073

0.707
  hapR Vibrio cholerae strain A1552

72.864

97.073

0.707