Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   H4B47_RS16940 Genome accession   NZ_CP060029
Coordinates   3478246..3478626 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AbCTX1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3473246..3483626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4B47_RS16910 (H4B47_16925) tadA 3473365..3473868 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  H4B47_RS16915 (H4B47_16930) - 3473875..3474999 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  H4B47_RS16920 (H4B47_16935) ung 3474996..3475709 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  H4B47_RS16925 (H4B47_16940) - 3475760..3476356 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  H4B47_RS16930 (H4B47_16945) gspK 3476586..3477545 (-) 960 WP_000301463.1 type II secretion system minor pseudopilin GspK -
  H4B47_RS16935 (H4B47_16950) xcpW 3477545..3478246 (-) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H4B47_RS16940 (H4B47_16955) xcpV 3478246..3478626 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  H4B47_RS16945 (H4B47_16960) - 3478616..3479170 (-) 555 WP_000841373.1 type II secretion system protein -
  H4B47_RS16950 (H4B47_16965) - 3479180..3479788 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  H4B47_RS16955 (H4B47_16970) - 3479826..3480599 (-) 774 WP_203469493.1 TatD family hydrolase -
  H4B47_RS16960 (H4B47_16975) - 3480617..3480958 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  H4B47_RS16965 (H4B47_16980) - 3480970..3481950 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  H4B47_RS16970 (H4B47_16985) kdsB 3481962..3482723 (-) 762 WP_000680694.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=473467 H4B47_RS16940 WP_000836911.1 3478246..3478626(-) (xcpV) [Acinetobacter baumannii strain AbCTX1]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=473467 H4B47_RS16940 WP_000836911.1 3478246..3478626(-) (xcpV) [Acinetobacter baumannii strain AbCTX1]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1