Detailed information NTG0473466

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: H4B47_RS16935
• Genome accession: NZ_CP060029
• Coordinates: 3477545..3478246 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain AbCTX1
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3472545..3483246

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4B47_RS16905 (H4B47_16920)	-	3472852..3473295 (-)	444	WP_001246676.1	SRPBCC family protein	-
H4B47_RS16910 (H4B47_16925)	tadA	3473365..3473868 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
H4B47_RS16915 (H4B47_16930)	-	3473875..3474999 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
H4B47_RS16920 (H4B47_16935)	ung	3474996..3475709 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
H4B47_RS16925 (H4B47_16940)	-	3475760..3476356 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
H4B47_RS16930 (H4B47_16945)	gspK	3476586..3477545 (-)	960	WP_000301463.1	type II secretion system minor pseudopilin GspK	-
H4B47_RS16935 (H4B47_16950)	xcpW	3477545..3478246 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
H4B47_RS16940 (H4B47_16955)	xcpV	3478246..3478626 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
H4B47_RS16945 (H4B47_16960)	-	3478616..3479170 (-)	555	WP_000841373.1	type II secretion system protein	-
H4B47_RS16950 (H4B47_16965)	-	3479180..3479788 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
H4B47_RS16955 (H4B47_16970)	-	3479826..3480599 (-)	774	WP_203469493.1	TatD family hydrolase	-
H4B47_RS16960 (H4B47_16975)	-	3480617..3480958 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
H4B47_RS16965 (H4B47_16980)	-	3480970..3481950 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
H4B47_RS16970 (H4B47_16985)	kdsB	3481962..3482723 (-)	762	WP_000680694.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=473466 H4B47_RS16935 WP_000594572.1 3477545..3478246(-) (xcpW) [Acinetobacter baumannii strain AbCTX1]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=473466 H4B47_RS16935 WP_000594572.1 3477545..3478246(-) (xcpW) [Acinetobacter baumannii strain AbCTX1]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GGTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991