Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H4B47_RS07725 Genome accession   NZ_CP060029
Coordinates   1584568..1585203 (-) Length   211 a.a.
NCBI ID   WP_000472266.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AbCTX1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1579568..1590203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4B47_RS07690 (H4B47_07710) mlaE 1579904..1580680 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  H4B47_RS07695 (H4B47_07715) - 1580680..1581360 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  H4B47_RS07700 (H4B47_07720) - 1581387..1582028 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  H4B47_RS07705 (H4B47_07725) - 1582040..1582327 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  H4B47_RS07710 (H4B47_07730) - 1582397..1583410 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  H4B47_RS07715 (H4B47_07735) - 1583568..1584149 (+) 582 WP_001084314.1 TIGR00730 family Rossman fold protein -
  H4B47_RS07720 (H4B47_07740) - 1584164..1584565 (+) 402 WP_000849704.1 NUDIX domain-containing protein -
  H4B47_RS07725 (H4B47_07745) comF 1584568..1585203 (-) 636 WP_000472266.1 ComF family protein Machinery gene
  H4B47_RS07730 (H4B47_07750) recG 1585196..1587241 (-) 2046 WP_000204949.1 ATP-dependent DNA helicase RecG -
  H4B47_RS07735 (H4B47_07755) - 1587262..1588077 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  H4B47_RS07740 (H4B47_07760) adeT2 1588157..1589143 (+) 987 WP_000712906.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24602.82 Da        Isoelectric Point: 9.5740

>NTDB_id=473458 H4B47_RS07725 WP_000472266.1 1584568..1585203(-) (comF) [Acinetobacter baumannii strain AbCTX1]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQIL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALCQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=473458 H4B47_RS07725 WP_000472266.1 1584568..1585203(-) (comF) [Acinetobacter baumannii strain AbCTX1]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAATCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCCAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTATG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

98.578

100

0.986
  comF Acinetobacter baumannii D1279779

97.63

100

0.976