Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6K13_RS16115 Genome accession   NZ_CP070162
Coordinates   3305126..3305863 (+) Length   245 a.a.
NCBI ID   WP_021524442.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1283     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3300126..3310863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K13_RS16100 (I6K13_16095) clpC 3300580..3303153 (-) 2574 WP_113263659.1 ATP-dependent chaperone ClpB Regulator
  I6K13_RS16105 (I6K13_16100) yfiH 3303283..3304014 (-) 732 WP_021524441.1 purine nucleoside phosphorylase YfiH -
  I6K13_RS16110 (I6K13_16105) rluD 3304011..3304991 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6K13_RS16115 (I6K13_16110) comL 3305126..3305863 (+) 738 WP_021524442.1 outer membrane protein assembly factor BamD Machinery gene
  I6K13_RS16120 (I6K13_16115) raiA 3306133..3306474 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I6K13_RS16125 (I6K13_16120) pheL 3306578..3306625 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I6K13_RS16130 (I6K13_16125) pheA 3306724..3307884 (+) 1161 WP_113263658.1 bifunctional chorismate mutase/prephenate dehydratase -
  I6K13_RS16135 (I6K13_16130) tyrA 3307927..3309048 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I6K13_RS16140 (I6K13_16135) aroF 3309059..3310129 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I6K13_RS16145 (I6K13_16140) yfiL 3310340..3310705 (+) 366 WP_000976008.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27855.48 Da        Isoelectric Point: 6.4874

>NTDB_id=473388 I6K13_RS16115 WP_021524442.1 3305126..3305863(+) (comL) [Escherichia coli strain FDAARGOS_1283]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NISNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=473388 I6K13_RS16115 WP_021524442.1 3305126..3305863(+) (comL) [Escherichia coli strain FDAARGOS_1283]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACATCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

37.903

100

0.384
  comL Neisseria gonorrhoeae MS11

37.097

100

0.376